Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   EL077_RS08675 Genome accession   NZ_LR134273
Coordinates   1837693..1838172 (-) Length   159 a.a.
NCBI ID   WP_126437050.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain NCTC12091     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1838498..1839895 1837693..1838172 flank 326


Gene organization within MGE regions


Location: 1837693..1839895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL077_RS08675 (NCTC12091_01758) comX/sigX/comX2/sigX2 1837693..1838172 (-) 480 WP_126437050.1 competence protein ComX Regulator
  EL077_RS08685 (NCTC12091_01760) - 1838498..1839895 (+) 1398 WP_126437056.1 ISNCY-like element ISSeq2 family transposase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19180.12 Da        Isoelectric Point: 8.2737

>NTDB_id=1119781 EL077_RS08675 WP_126437050.1 1837693..1838172(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. equi strain NCTC12091]
MTDDLVRLFDKIKPIIMKLRRHYYIQLWELDDWLQEGRFILYRLLVTYPELIEDEEKLYRYFKTKFSSYLKDVLRQQESQ
KRRFHKMAYEEIGSVGHAIPAGGLGVDDYVAYQLIVKEVEERLTESELSQFRALIRGERFEGRRALLRKIGPYFQDFTG

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1119781 EL077_RS08675 WP_126437050.1 1837693..1838172(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. equi strain NCTC12091]
ATGACTGATGATTTAGTGAGGTTATTTGATAAGATCAAGCCTATTATTATGAAGCTAAGACGGCATTATTATATTCAGCT
GTGGGAGCTAGATGATTGGTTACAGGAGGGGCGGTTCATCTTGTATCGGTTATTGGTCACTTATCCAGAATTGATAGAGG
ATGAGGAGAAGTTGTATCGTTATTTTAAGACCAAGTTTTCCTCTTATTTGAAGGACGTGTTGCGGCAGCAGGAGAGTCAG
AAGCGTCGGTTTCATAAGATGGCTTATGAGGAGATTGGGTCGGTAGGCCATGCGATACCAGCAGGTGGTTTGGGAGTAGA
TGATTATGTGGCTTATCAGTTGATTGTGAAGGAGGTTGAGGAGCGATTGACAGAGAGTGAGCTGTCGCAGTTTCGGGCTT
TGATCAGGGGAGAGCGGTTTGAGGGGAGACGGGCCTTGCTTCGCAAGATAGGACCTTACTTTCAGGATTTTACTGGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.