Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   EL020_RS09240 Genome accession   NZ_LR134203
Coordinates   1820898..1821374 (-) Length   158 a.a.
NCBI ID   WP_081665447.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC11436     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815898..1826374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL020_RS09215 (NCTC11436_01961) - 1816809..1817399 (-) 591 WP_126402664.1 glycoside hydrolase family 73 protein -
  EL020_RS09220 (NCTC11436_01962) - 1817396..1818172 (-) 777 WP_020916138.1 M15 family metallopeptidase -
  EL020_RS09225 (NCTC11436_01963) - 1818156..1818860 (-) 705 WP_020916137.1 histidine phosphatase family protein -
  EL020_RS09230 (NCTC11436_01964) - 1819090..1820427 (-) 1338 WP_111698210.1 PFL family protein -
  EL020_RS09235 (NCTC11436_01965) - 1820439..1820705 (-) 267 WP_020916135.1 ACT domain-containing protein -
  EL020_RS09240 (NCTC11436_01966) comX/sigX 1820898..1821374 (-) 477 WP_081665447.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19498.37 Da        Isoelectric Point: 9.1153

>NTDB_id=1118990 EL020_RS09240 WP_081665447.1 1820898..1821374(-) (comX/sigX) [Streptococcus lutetiensis strain NCTC11436]
MDFERYFQTVKPIILKLRRYYFVKLWDYEDWIQEGRIIFFELVEEHPDLLINEGKRYSYFKTKFSNHVKDIIRHQESFKR
KFNRMPYEEIGDISHCVPQVSFFEVADYVAYQDSLARLRRTLGREDRLKLEKVIRGERFEGKKDFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1118990 EL020_RS09240 WP_081665447.1 1820898..1821374(-) (comX/sigX) [Streptococcus lutetiensis strain NCTC11436]
GTGGATTTTGAACGCTATTTTCAAACGGTTAAACCAATTATTTTAAAATTACGTCGTTATTATTTTGTCAAACTCTGGGA
TTATGAGGATTGGATTCAAGAGGGACGTATTATTTTCTTTGAACTTGTAGAGGAACATCCTGATCTCTTAATTAATGAAG
GCAAACGTTATAGCTACTTTAAAACAAAATTTTCTAACCATGTTAAAGATATTATCCGCCATCAGGAATCCTTTAAACGA
AAATTTAATCGTATGCCTTATGAAGAAATTGGTGATATTAGTCACTGTGTACCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTACGTGGCTTATCAGGATAGCTTAGCACGTTTACGAAGAACATTGGGAAGAGAAGATAGACTGAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGACTTCTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGACCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.