Detailed information NTG1118953

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: EL020_RS03690
• Genome accession: NZ_LR134203
• Coordinates: 705413..705706 (+)
• Length: 97 a.a.
• NCBI ID: WP_020915989.1
• Uniprot ID: -
• Organism: Streptococcus lutetiensis strain NCTC11436
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 700413..710706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL020_RS03675 (NCTC11436_00764)	-	703065..703433 (+)	369	WP_126402407.1	DUF1033 family protein	-
EL020_RS03680 (NCTC11436_00765)	comYA	703505..704446 (+)	942	WP_020915987.1	competence type IV pilus ATPase ComGA	Machinery gene
EL020_RS03685 (NCTC11436_00766)	comYB	704370..705413 (+)	1044	WP_231997012.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL020_RS03690 (NCTC11436_00767)	comYC	705413..705706 (+)	294	WP_020915989.1	competence type IV pilus major pilin ComGC	Machinery gene
EL020_RS03695 (NCTC11436_00768)	comYD	705690..706121 (+)	432	WP_020915990.1	competence type IV pilus minor pilin ComGD	Machinery gene
EL020_RS03700 (NCTC11436_00769)	comYE	706075..706368 (+)	294	WP_020915991.1	competence type IV pilus minor pilin ComGE	Machinery gene
EL020_RS03705 (NCTC11436_00770)	comYF	706352..706789 (+)	438	WP_043894883.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL020_RS03710 (NCTC11436_00771)	comGG	706761..707111 (+)	351	WP_020915993.1	competence type IV pilus minor pilin ComGG	-
EL020_RS03715 (NCTC11436_00772)	comYH	707165..708121 (+)	957	WP_020915994.1	class I SAM-dependent methyltransferase	Machinery gene
EL020_RS03720 (NCTC11436_00773)	-	708175..709374 (+)	1200	WP_126402408.1	acetate kinase	-
EL020_RS03725 (NCTC11436_00774)	-	709534..709731 (+)	198	WP_020915996.1	helix-turn-helix transcriptional regulator	-
EL020_RS03730 (NCTC11436_00775)	-	709721..709948 (+)	228	WP_231997018.1	hypothetical protein	-
EL020_RS03735 (NCTC11436_00776)	-	709949..710404 (+)	456	WP_231853254.1	ABC transporter permease	-

Sequence

Protein

• Length: 97 a.a.
• Molecular weight: 11018.16 Da
• Isoelectric Point: 10.1006

>NTDB_id=1118953 EL020_RS03690 WP_020915989.1 705413..705706(+) (comYC) [Streptococcus lutetiensis strain NCTC11436]
MKNIWKKLRKKSVEAFTLVEMLIVLLIIGVLMLLFVPNLSKQKEVVHEKGDAAVVKVVESQMELYEVKTGKQPTVNDLVK
AEYISKDQAQTYNAAKK

Nucleotide

• Length: 294 bp

>NTDB_id=1118953 EL020_RS03690 WP_020915989.1 705413..705706(+) (comYC) [Streptococcus lutetiensis strain NCTC11436]
ATGAAAAACATTTGGAAAAAACTACGTAAAAAGTCTGTAGAAGCTTTTACACTTGTGGAGATGTTGATTGTTTTGCTAAT
CATTGGTGTCTTGATGCTGTTATTTGTGCCAAACTTGAGCAAGCAAAAAGAGGTTGTGCATGAAAAAGGAGATGCTGCTG
TTGTCAAAGTTGTCGAAAGTCAGATGGAGCTTTATGAAGTGAAGACAGGTAAACAACCAACTGTAAATGATTTGGTGAAA
GCTGAATATATTTCAAAAGACCAAGCTCAAACATATAATGCGGCTAAAAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (13-34)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus gordonii str. Challis substr. CH1	68.539	91.753	0.629
comYC	Streptococcus suis isolate S10	60.87	94.845	0.577
comGC/cglC	Streptococcus mitis SK321	56.989	95.876	0.546
comGC/cglC	Streptococcus pneumoniae Rx1	56.522	94.845	0.536
comGC/cglC	Streptococcus pneumoniae D39	56.522	94.845	0.536
comGC/cglC	Streptococcus pneumoniae R6	56.522	94.845	0.536
comGC/cglC	Streptococcus pneumoniae TIGR4	56.522	94.845	0.536
comGC/cglC	Streptococcus mitis NCTC 12261	56.522	94.845	0.536
comYC	Streptococcus mutans UA140	56.322	89.691	0.505
comYC	Streptococcus mutans UA159	56.322	89.691	0.505
comGC	Lactococcus lactis subsp. cremoris KW2	51.685	91.753	0.474
comGC	Latilactobacillus sakei subsp. sakei 23K	45.57	81.443	0.371