Detailed information NTG1118956

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: EL020_RS03705
• Genome accession: NZ_LR134203
• Coordinates: 706352..706789 (+)
• Length: 145 a.a.
• NCBI ID: WP_043894883.1
• Uniprot ID: -
• Organism: Streptococcus lutetiensis strain NCTC11436
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 701352..711789

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL020_RS03675 (NCTC11436_00764)	-	703065..703433 (+)	369	WP_126402407.1	DUF1033 family protein	-
EL020_RS03680 (NCTC11436_00765)	comYA	703505..704446 (+)	942	WP_020915987.1	competence type IV pilus ATPase ComGA	Machinery gene
EL020_RS03685 (NCTC11436_00766)	comYB	704370..705413 (+)	1044	WP_231997012.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL020_RS03690 (NCTC11436_00767)	comYC	705413..705706 (+)	294	WP_020915989.1	competence type IV pilus major pilin ComGC	Machinery gene
EL020_RS03695 (NCTC11436_00768)	comYD	705690..706121 (+)	432	WP_020915990.1	competence type IV pilus minor pilin ComGD	Machinery gene
EL020_RS03700 (NCTC11436_00769)	comYE	706075..706368 (+)	294	WP_020915991.1	competence type IV pilus minor pilin ComGE	Machinery gene
EL020_RS03705 (NCTC11436_00770)	comYF	706352..706789 (+)	438	WP_043894883.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL020_RS03710 (NCTC11436_00771)	comGG	706761..707111 (+)	351	WP_020915993.1	competence type IV pilus minor pilin ComGG	-
EL020_RS03715 (NCTC11436_00772)	comYH	707165..708121 (+)	957	WP_020915994.1	class I SAM-dependent methyltransferase	Machinery gene
EL020_RS03720 (NCTC11436_00773)	-	708175..709374 (+)	1200	WP_126402408.1	acetate kinase	-
EL020_RS03725 (NCTC11436_00774)	-	709534..709731 (+)	198	WP_020915996.1	helix-turn-helix transcriptional regulator	-
EL020_RS03730 (NCTC11436_00775)	-	709721..709948 (+)	228	WP_231997018.1	hypothetical protein	-
EL020_RS03735 (NCTC11436_00776)	-	709949..710404 (+)	456	WP_231853254.1	ABC transporter permease	-
EL020_RS03740 (NCTC11436_00777)	-	710419..711054 (+)	636	WP_058833293.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16159.52 Da
• Isoelectric Point: 9.8332

>NTDB_id=1118956 EL020_RS03705 WP_043894883.1 706352..706789(+) (comYF) [Streptococcus lutetiensis strain NCTC11436]
MSRKIRLRAFTLLESLVALLVISGSILVYQGLTQSISSNVHYLSANQEEKWLLFSQQLRSELAGCQLNKVADNKLYVSKG
NQQLAYGLSKADDFRKTNASGQGYQPMFFGVTSSSISQDGNKVIIKLQLGSDMERCFVYTFKTTS

Nucleotide

• Length: 438 bp

>NTDB_id=1118956 EL020_RS03705 WP_043894883.1 706352..706789(+) (comYF) [Streptococcus lutetiensis strain NCTC11436]
ATGTCACGAAAAATTAGATTAAGAGCTTTTACCCTTTTAGAAAGTTTGGTAGCTTTGCTGGTTATCTCAGGTTCCATATT
GGTTTATCAAGGATTGACCCAAAGCATTTCAAGCAATGTCCATTATTTATCGGCGAATCAAGAGGAAAAATGGTTGCTCT
TTTCTCAGCAGCTGCGTTCTGAGCTTGCTGGTTGTCAGTTGAATAAAGTTGCTGACAACAAACTCTATGTTAGTAAAGGT
AATCAGCAATTGGCTTATGGCTTGTCTAAGGCTGATGATTTTCGAAAAACAAATGCCTCAGGTCAGGGTTATCAACCCAT
GTTCTTTGGCGTGACGTCATCTAGCATCAGTCAGGATGGCAATAAGGTGATAATTAAACTGCAATTAGGCAGTGATATGG
AGAGATGTTTTGTTTACACTTTTAAGACGACAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.696	95.172	0.559
comYF	Streptococcus mutans UA159	57.971	95.172	0.552
comGF/cglF	Streptococcus pneumoniae Rx1	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae D39	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae R6	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae TIGR4	45.652	95.172	0.434
comGF	Lactococcus lactis subsp. cremoris KW2	43.972	97.241	0.428
comGF/cglF	Streptococcus mitis NCTC 12261	43.885	95.862	0.421
comGF/cglF	Streptococcus mitis SK321	43.165	95.862	0.414