Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACOI0R_RS09780 | Genome accession | NZ_CP184802 |
| Coordinates | 876508..876768 (+) | Length | 86 a.a. |
| NCBI ID | WP_370466065.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. piscicida strain DQ-SS1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 871508..881768
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOI0R_RS09770 | hupB | 873796..874068 (+) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
| ACOI0R_RS09775 | ppiD | 874419..876317 (+) | 1899 | WP_068969096.1 | peptidylprolyl isomerase | - |
| ACOI0R_RS09780 | comEA | 876508..876768 (+) | 261 | WP_370466065.1 | ComEA family DNA-binding protein | Machinery gene |
| ACOI0R_RS09785 | - | 876853..877191 (-) | 339 | WP_420745583.1 | DUF1971 domain-containing protein | - |
| ACOI0R_RS09790 | rrtA | 877278..877835 (-) | 558 | WP_237033477.1 | rhombosortase | - |
| ACOI0R_RS09795 | - | 877845..878462 (+) | 618 | WP_068969098.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACOI0R_RS09800 | - | 878674..880002 (-) | 1329 | WP_420745584.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACOI0R_RS09805 | yfbR | 880002..880586 (-) | 585 | WP_138241821.1 | 5'-deoxynucleotidase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9485.96 Da Isoelectric Point: 5.1351
>NTDB_id=1111343 ACOI0R_RS09780 WP_370466065.1 876508..876768(+) (comEA) [Photobacterium damselae subsp. piscicida strain DQ-SS1]
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=1111343 ACOI0R_RS09780 WP_370466065.1 876508..876768(+) (comEA) [Photobacterium damselae subsp. piscicida strain DQ-SS1]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGAATTGGTCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGTATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGAATTGGTCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGTATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.118 |
98.837 |
0.535 |
| comEA | Vibrio campbellii strain DS40M4 |
53.488 |
100 |
0.535 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comA | Synechocystis sp. PCC 6803 |
43.421 |
88.372 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50 |
72.093 |
0.36 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |