Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACNYC6_RS17955 | Genome accession | NZ_CP183416 |
| Coordinates | 3950629..3951048 (+) | Length | 139 a.a. |
| NCBI ID | WP_419708526.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. NFX224 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3945629..3956048
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACNYC6_RS17930 (ACNYC6_17930) | yacG | 3945792..3945992 (-) | 201 | WP_034148252.1 | DNA gyrase inhibitor YacG | - |
| ACNYC6_RS17935 (ACNYC6_17935) | coaE | 3945989..3946612 (-) | 624 | WP_419708522.1 | dephospho-CoA kinase | - |
| ACNYC6_RS17940 (ACNYC6_17940) | pilD | 3946609..3947481 (-) | 873 | WP_419708523.1 | prepilin peptidase | Machinery gene |
| ACNYC6_RS17945 (ACNYC6_17945) | pilC | 3947483..3948700 (-) | 1218 | WP_419708524.1 | type II secretion system F family protein | Machinery gene |
| ACNYC6_RS17950 (ACNYC6_17950) | pilB | 3948703..3950403 (-) | 1701 | WP_419708525.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACNYC6_RS17955 (ACNYC6_17955) | pilA | 3950629..3951048 (+) | 420 | WP_419708526.1 | pilin | Machinery gene |
| ACNYC6_RS17960 (ACNYC6_17960) | - | 3951358..3951714 (+) | 357 | WP_419708527.1 | BON domain-containing protein | - |
| ACNYC6_RS17965 (ACNYC6_17965) | - | 3951874..3952176 (-) | 303 | WP_419708528.1 | DUF2845 domain-containing protein | - |
| ACNYC6_RS17970 (ACNYC6_17970) | - | 3952176..3955127 (-) | 2952 | WP_419708529.1 | DUF748 domain-containing protein | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14176.34 Da Isoelectric Point: 8.1062
>NTDB_id=1105665 ACNYC6_RS17955 WP_419708526.1 3950629..3951048(+) (pilA) [Pseudomonas sp. NFX224]
MNTQKGFTLIELLIVVAIIGILATFAIPAYSKYQARAKVTAGLAEISALKVPFEDIINQGTDPDLTKVGGTAATSNCTTT
ASGKAADGTGTIGCTILNAPGPVLNKTITLSRTVSGWTCATTVDQEYAPKGCTGVAPKA
MNTQKGFTLIELLIVVAIIGILATFAIPAYSKYQARAKVTAGLAEISALKVPFEDIINQGTDPDLTKVGGTAATSNCTTT
ASGKAADGTGTIGCTILNAPGPVLNKTITLSRTVSGWTCATTVDQEYAPKGCTGVAPKA
Nucleotide
Download Length: 420 bp
>NTDB_id=1105665 ACNYC6_RS17955 WP_419708526.1 3950629..3951048(+) (pilA) [Pseudomonas sp. NFX224]
ATGAACACTCAAAAAGGTTTTACCCTGATCGAGTTGCTGATCGTGGTGGCGATCATCGGGATTCTCGCGACGTTTGCGAT
ACCGGCGTATTCCAAGTATCAGGCGCGGGCCAAGGTGACGGCGGGGCTGGCGGAGATTTCGGCATTGAAAGTGCCGTTCG
AGGACATTATCAATCAGGGGACCGACCCTGATTTGACCAAGGTGGGTGGGACGGCGGCCACCTCCAACTGCACGACCACG
GCTTCGGGTAAAGCGGCTGATGGTACTGGCACCATTGGATGCACGATCCTCAATGCACCGGGCCCGGTACTGAATAAAAC
CATTACCCTTTCGCGTACGGTGTCGGGCTGGACGTGCGCTACGACCGTGGATCAGGAATACGCGCCGAAGGGCTGCACAG
GGGTTGCTCCGAAAGCTTGA
ATGAACACTCAAAAAGGTTTTACCCTGATCGAGTTGCTGATCGTGGTGGCGATCATCGGGATTCTCGCGACGTTTGCGAT
ACCGGCGTATTCCAAGTATCAGGCGCGGGCCAAGGTGACGGCGGGGCTGGCGGAGATTTCGGCATTGAAAGTGCCGTTCG
AGGACATTATCAATCAGGGGACCGACCCTGATTTGACCAAGGTGGGTGGGACGGCGGCCACCTCCAACTGCACGACCACG
GCTTCGGGTAAAGCGGCTGATGGTACTGGCACCATTGGATGCACGATCCTCAATGCACCGGGCCCGGTACTGAATAAAAC
CATTACCCTTTCGCGTACGGTGTCGGGCTGGACGTGCGCTACGACCGTGGATCAGGAATACGCGCCGAAGGGCTGCACAG
GGGTTGCTCCGAAAGCTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
49.296 |
100 |
0.504 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
49.635 |
98.561 |
0.489 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.099 |
100 |
0.468 |
| pilA | Vibrio cholerae strain A1552 |
46.099 |
100 |
0.468 |
| pilA | Vibrio cholerae C6706 |
46.099 |
100 |
0.468 |
| pilA | Pseudomonas aeruginosa PAK |
42.282 |
100 |
0.453 |
| pilA2 | Legionella pneumophila str. Paris |
42.553 |
100 |
0.432 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.553 |
100 |
0.432 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
44.444 |
97.122 |
0.432 |
| comP | Acinetobacter baylyi ADP1 |
38.776 |
100 |
0.41 |