Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACNYC6_RS17945 Genome accession   NZ_CP183416
Coordinates   3947483..3948700 (-) Length   405 a.a.
NCBI ID   WP_419708524.1    Uniprot ID   -
Organism   Pseudomonas sp. NFX224     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3942483..3953700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNYC6_RS17915 (ACNYC6_17915) - 3943360..3944628 (+) 1269 WP_419708519.1 OprD family porin -
  ACNYC6_RS17920 (ACNYC6_17920) - 3944637..3944879 (-) 243 WP_419708520.1 DUF2790 domain-containing protein -
  ACNYC6_RS17925 (ACNYC6_17925) - 3945067..3945756 (+) 690 WP_419708521.1 energy-coupling factor ABC transporter permease -
  ACNYC6_RS17930 (ACNYC6_17930) yacG 3945792..3945992 (-) 201 WP_034148252.1 DNA gyrase inhibitor YacG -
  ACNYC6_RS17935 (ACNYC6_17935) coaE 3945989..3946612 (-) 624 WP_419708522.1 dephospho-CoA kinase -
  ACNYC6_RS17940 (ACNYC6_17940) pilD 3946609..3947481 (-) 873 WP_419708523.1 prepilin peptidase Machinery gene
  ACNYC6_RS17945 (ACNYC6_17945) pilC 3947483..3948700 (-) 1218 WP_419708524.1 type II secretion system F family protein Machinery gene
  ACNYC6_RS17950 (ACNYC6_17950) pilB 3948703..3950403 (-) 1701 WP_419708525.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACNYC6_RS17955 (ACNYC6_17955) pilA 3950629..3951048 (+) 420 WP_419708526.1 pilin Machinery gene
  ACNYC6_RS17960 (ACNYC6_17960) - 3951358..3951714 (+) 357 WP_419708527.1 BON domain-containing protein -
  ACNYC6_RS17965 (ACNYC6_17965) - 3951874..3952176 (-) 303 WP_419708528.1 DUF2845 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44313.18 Da        Isoelectric Point: 9.8993

>NTDB_id=1105663 ACNYC6_RS17945 WP_419708524.1 3947483..3948700(-) (pilC) [Pseudomonas sp. NFX224]
MAVKAAKISIYAWEGTDRKGTKVTGELSGQNPALIKAQLRKQGINPGKVRKKSVSLFNVGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRTLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLVVVFVAMIVTGILLVKVVPQFQSVFEGFGAELPAFTVMVIGLSRFMQDWWWMMLGVLIVAIFGGR
HAFRTSQGFRDRMDAWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALESVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRTSGIFPNMAVQMTAIGEESGALDDMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1105663 ACNYC6_RS17945 WP_419708524.1 3947483..3948700(-) (pilC) [Pseudomonas sp. NFX224]
ATGGCGGTCAAGGCAGCGAAAATCAGTATTTACGCCTGGGAAGGCACCGACCGCAAAGGCACGAAAGTCACCGGCGAGTT
GAGCGGGCAAAACCCGGCGCTGATCAAGGCGCAACTGCGCAAGCAAGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCG
TCTCGCTGTTCAACGTCGGCAAACGCATCAAGGCCCAGGACATTGCTCTGTTCACACGACAGATGGCGACCATGATGAAA
GCCGGCGTGCCGCTGTTGCAGTCGTTCGACATCATCGGCGAAGGCTTCGATAACCCGGCCATGCGCACGCTGGTGGACGA
GGTCAAACAAGAAGTCGCGGCCGGCAACAGCTTCGCCGCCGCCTTGCGCAAAAAGCCGCAATATTTCGATGAGCTGTACT
GCAATCTGGTGGATGCCGGGGAGCAGGCCGGCGCGCTGGACACCCTGCTGGAACGGGTGGCGACCTATAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGCTGGTGGTGGTGTTCGTCGCGATGATTGTCACCGGGAT
CCTGCTGGTCAAAGTGGTGCCGCAATTCCAGTCGGTGTTCGAAGGGTTTGGTGCCGAATTGCCCGCCTTTACCGTGATGG
TCATTGGCCTGTCGCGGTTCATGCAGGACTGGTGGTGGATGATGCTCGGCGTGCTGATCGTGGCGATTTTCGGGGGGCGT
CATGCCTTCAGGACATCACAGGGCTTTCGCGACCGAATGGACGCCTGGCTGCTGAAGCTGCCGCTGGTGGGCACCTTGAT
GTACAAATCCGCCGTCGCGCGTTTCGCCCGCACGTTGTCGACGACCTTCGCCGCCGGTGTGCCGCTGGTCGAAGCGCTGG
AATCGGTGGCCGGCGCCACCGGCAACGTCGTGTTCAAGCGCGCGGTGCTGCGCATCAGGCAGGACGTGTCGACGGGCATG
CAGCTGAATTTTTCCATGCGCACCTCCGGCATCTTTCCGAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCACTGGACGACATGCTCGACAAGGTCGCCGGTTTCTACGAGGACGAGGTGGACAATATGGTCGATAACCTCACCAGCC
TGATGGAACCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGCGGATTGGTGGTTGCCATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.58

100

0.736
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Acinetobacter baumannii D1279779

58.578

100

0.59
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilG Neisseria gonorrhoeae MS11

43.532

99.259

0.432
  pilG Neisseria meningitidis 44/76-A

43.035

99.259

0.427
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilC Vibrio campbellii strain DS40M4

40.887

100

0.41
  pilC Thermus thermophilus HB27

37.905

99.012

0.375

Multiple sequence alignment