Detailed information NTG1105662

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACNYC6_RS17940
• Genome accession: NZ_CP183416
• Coordinates: 3946609..3947481 (-)
• Length: 290 a.a.
• NCBI ID: WP_419708523.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NFX224
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3941609..3952481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNYC6_RS17910 (ACNYC6_17910)	-	3942123..3943343 (+)	1221	WP_419708518.1	benzoate/H(+) symporter BenE family transporter	-
ACNYC6_RS17915 (ACNYC6_17915)	-	3943360..3944628 (+)	1269	WP_419708519.1	OprD family porin	-
ACNYC6_RS17920 (ACNYC6_17920)	-	3944637..3944879 (-)	243	WP_419708520.1	DUF2790 domain-containing protein	-
ACNYC6_RS17925 (ACNYC6_17925)	-	3945067..3945756 (+)	690	WP_419708521.1	energy-coupling factor ABC transporter permease	-
ACNYC6_RS17930 (ACNYC6_17930)	yacG	3945792..3945992 (-)	201	WP_034148252.1	DNA gyrase inhibitor YacG	-
ACNYC6_RS17935 (ACNYC6_17935)	coaE	3945989..3946612 (-)	624	WP_419708522.1	dephospho-CoA kinase	-
ACNYC6_RS17940 (ACNYC6_17940)	pilD	3946609..3947481 (-)	873	WP_419708523.1	prepilin peptidase	Machinery gene
ACNYC6_RS17945 (ACNYC6_17945)	pilC	3947483..3948700 (-)	1218	WP_419708524.1	type II secretion system F family protein	Machinery gene
ACNYC6_RS17950 (ACNYC6_17950)	pilB	3948703..3950403 (-)	1701	WP_419708525.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACNYC6_RS17955 (ACNYC6_17955)	pilA	3950629..3951048 (+)	420	WP_419708526.1	pilin	Machinery gene
ACNYC6_RS17960 (ACNYC6_17960)	-	3951358..3951714 (+)	357	WP_419708527.1	BON domain-containing protein	-
ACNYC6_RS17965 (ACNYC6_17965)	-	3951874..3952176 (-)	303	WP_419708528.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32343.72 Da
• Isoelectric Point: 8.2563

>NTDB_id=1105662 ACNYC6_RS17940 WP_419708523.1 3946609..3947481(-) (pilD) [Pseudomonas sp. NFX224]
MPLNEILIQYPLAFVVIAGVIGLLVGSFLNVLVWRLPKMLERDWRVQAHEILGLPAETPLPTFNLFLPHSQCPHCTHRIR
AWENIPLLSFAFLRGRCSACATAISKRYPLTELACGLLSAFIAWHFGFGWQACMALLLTWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLIVNSLDLFVPLHDALWGAIAGYMALWSVFWLFKLITGKDGMGHGDFKLLALFGAWGGWQILPLTILLSSLVG
AVIGVIYLRLRKAKNSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1105662 ACNYC6_RS17940 WP_419708523.1 3946609..3947481(-) (pilD) [Pseudomonas sp. NFX224]
ATGCCCTTGAACGAAATACTGATTCAATACCCGCTGGCTTTCGTGGTGATCGCCGGAGTGATCGGTCTGCTGGTCGGCAG
TTTCCTCAACGTGCTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGAGATTGGCGCGTCCAGGCCCATGAGATCCTCGGAC
TGCCCGCTGAAACGCCGCTGCCGACCTTCAATCTGTTCCTGCCCCACTCCCAGTGCCCACATTGCACCCACCGGATTCGT
GCCTGGGAAAACATTCCGCTGCTGAGTTTTGCGTTTTTGCGGGGACGTTGCTCCGCTTGTGCCACTGCGATCAGCAAACG
CTATCCGCTGACCGAACTGGCCTGCGGTCTGTTGTCGGCGTTCATTGCCTGGCACTTCGGCTTCGGCTGGCAGGCCTGCA
TGGCGCTGCTGCTGACCTGGGGTCTGTTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGTTGCCGGATGTGCTGGTG
TTGCCGTTGATGTGGCTGGGGCTGATCGTCAACAGTCTCGACCTGTTCGTGCCGCTGCATGACGCGTTGTGGGGCGCCAT
TGCCGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATAACCGGCAAGGACGGCATGGGCCACGGTGATT
TCAAGTTACTGGCGCTGTTTGGCGCCTGGGGCGGTTGGCAGATTTTGCCGCTGACCATCCTCCTTTCATCCCTGGTGGGG
GCCGTTATCGGCGTGATTTACCTGCGCCTGCGCAAGGCTAAAAACTCGACGCCGATTCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.128	97.241	0.507
pilD	Vibrio campbellii strain DS40M4	50.355	97.241	0.49
pilD	Neisseria gonorrhoeae MS11	48.519	93.103	0.452
pilD	Acinetobacter baumannii D1279779	46.595	96.207	0.448
pilD	Acinetobacter nosocomialis M2	46.595	96.207	0.448