Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | Q9260_RS07685 | Genome accession | NZ_CP182536 |
| Coordinates | 1594885..1595310 (+) | Length | 141 a.a. |
| NCBI ID | WP_011408068.1 | Uniprot ID | - |
| Organism | Xanthomonas oryzae pv. oryzae strain A83 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1584098..1597674 | 1594885..1595310 | within | 0 |
Gene organization within MGE regions
Location: 1584098..1597674
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9260_RS07615 (Q9260_07605) | - | 1584247..1584546 (+) | 300 | WP_125168747.1 | hypothetical protein | - |
| Q9260_RS07620 (Q9260_07610) | - | 1584543..1584872 (+) | 330 | WP_125168748.1 | hypothetical protein | - |
| Q9260_RS07625 (Q9260_07615) | - | 1584874..1586382 (+) | 1509 | WP_011258354.1 | RHS repeat domain-containing protein | - |
| Q9260_RS07630 (Q9260_07620) | - | 1586388..1586756 (+) | 369 | WP_011408064.1 | DUF6869 domain-containing protein | - |
| Q9260_RS07635 (Q9260_07625) | - | 1586926..1587894 (-) | 969 | WP_011258802.1 | IS5-like element ISXo1 family transposase | - |
| Q9260_RS07640 (Q9260_07630) | - | 1588011..1588157 (+) | 147 | Protein_1450 | IS701 family transposase | - |
| Q9260_RS07645 (Q9260_07635) | - | 1588275..1588496 (+) | 222 | Protein_1451 | IS4 family transposase | - |
| Q9260_RS07650 (Q9260_07640) | - | 1588586..1589542 (+) | 957 | WP_041182041.1 | IS30-like element IS1112a family transposase | - |
| Q9260_RS07655 (Q9260_07645) | - | 1589526..1589828 (+) | 303 | WP_158645227.1 | hypothetical protein | - |
| Q9260_RS07660 (Q9260_07650) | - | 1589783..1590322 (+) | 540 | WP_178383556.1 | DUF6714 family protein | - |
| Q9260_RS07665 (Q9260_07655) | - | 1590389..1591708 (-) | 1320 | WP_154741199.1 | IS701-like element ISXo15 family transposase | - |
| Q9260_RS07670 (Q9260_07660) | coaE | 1591779..1592387 (-) | 609 | WP_011258357.1 | dephospho-CoA kinase | - |
| Q9260_RS07675 (Q9260_07665) | - | 1592401..1593264 (-) | 864 | WP_011258358.1 | prepilin peptidase | - |
| Q9260_RS07680 (Q9260_07670) | pilC | 1593271..1594530 (-) | 1260 | WP_011408067.1 | type II secretion system F family protein | Machinery gene |
| Q9260_RS07685 (Q9260_07675) | pilA2 | 1594885..1595310 (+) | 426 | WP_011408068.1 | pilin | Machinery gene |
| Q9260_RS07690 (Q9260_07680) | - | 1595445..1597034 (+) | 1590 | WP_069959793.1 | phosphoethanolamine transferase | - |
| Q9260_RS07695 (Q9260_07685) | - | 1597045..1597674 (+) | 630 | WP_011408070.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14442.76 Da Isoelectric Point: 9.0090
>NTDB_id=1102135 Q9260_RS07685 WP_011408068.1 1594885..1595310(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain A83]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
Nucleotide
Download Length: 426 bp
>NTDB_id=1102135 Q9260_RS07685 WP_011408068.1 1594885..1595310(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain A83]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
51.471 |
96.454 |
0.496 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.471 |
96.454 |
0.496 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.818 |
100 |
0.489 |
| comP | Acinetobacter baylyi ADP1 |
43.537 |
100 |
0.454 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.054 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
37.278 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae MS11 |
37.5 |
100 |
0.426 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.446 |
98.582 |
0.418 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.222 |
95.745 |
0.404 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.333 |
100 |
0.397 |
| pilA | Acinetobacter baumannii strain A118 |
38.298 |
100 |
0.383 |
| pilA | Pseudomonas aeruginosa PAK |
36 |
100 |
0.383 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.157 |
90.071 |
0.362 |