Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | Q9283_RS07775 | Genome accession | NZ_CP182530 |
| Coordinates | 1609977..1610402 (+) | Length | 141 a.a. |
| NCBI ID | WP_011408068.1 | Uniprot ID | - |
| Organism | Xanthomonas oryzae pv. oryzae strain A139 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1598031..1612766 | 1609977..1610402 | within | 0 |
Gene organization within MGE regions
Location: 1598031..1612766
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9283_RS07700 (Q9283_07690) | - | 1598180..1598479 (+) | 300 | WP_143699999.1 | hypothetical protein | - |
| Q9283_RS07705 (Q9283_07695) | - | 1598476..1598805 (+) | 330 | WP_125168748.1 | hypothetical protein | - |
| Q9283_RS07710 (Q9283_07700) | - | 1598807..1600315 (+) | 1509 | WP_011258354.1 | RHS repeat domain-containing protein | - |
| Q9283_RS07715 (Q9283_07705) | - | 1600321..1600689 (+) | 369 | WP_011408064.1 | DUF6869 domain-containing protein | - |
| Q9283_RS07720 (Q9283_07710) | - | 1600836..1601804 (-) | 969 | WP_011258802.1 | IS5-like element ISXo1 family transposase | - |
| Q9283_RS07725 (Q9283_07715) | - | 1602019..1602987 (-) | 969 | WP_011258802.1 | IS5-like element ISXo1 family transposase | - |
| Q9283_RS07730 (Q9283_07720) | - | 1603104..1603250 (+) | 147 | Protein_1468 | IS701 family transposase | - |
| Q9283_RS07735 (Q9283_07725) | - | 1603368..1603589 (+) | 222 | Protein_1469 | IS4 family transposase | - |
| Q9283_RS07740 (Q9283_07730) | - | 1603679..1604635 (+) | 957 | WP_041182041.1 | IS30-like element IS1112a family transposase | - |
| Q9283_RS07745 (Q9283_07735) | - | 1604619..1604921 (+) | 303 | WP_158645227.1 | hypothetical protein | - |
| Q9283_RS07750 (Q9283_07740) | - | 1604921..1605415 (+) | 495 | WP_146775777.1 | DUF6714 family protein | - |
| Q9283_RS07755 (Q9283_07745) | - | 1605482..1606800 (-) | 1319 | Protein_1473 | IS701-like element ISXo15 family transposase | - |
| Q9283_RS07760 (Q9283_07750) | coaE | 1606871..1607479 (-) | 609 | WP_011258357.1 | dephospho-CoA kinase | - |
| Q9283_RS07765 (Q9283_07755) | - | 1607493..1608356 (-) | 864 | WP_011258358.1 | prepilin peptidase | - |
| Q9283_RS07770 (Q9283_07760) | pilC | 1608363..1609622 (-) | 1260 | WP_011408067.1 | type II secretion system F family protein | Machinery gene |
| Q9283_RS07775 (Q9283_07765) | pilA2 | 1609977..1610402 (+) | 426 | WP_011408068.1 | pilin | Machinery gene |
| Q9283_RS07780 (Q9283_07770) | - | 1610537..1612126 (+) | 1590 | WP_011408069.1 | phosphoethanolamine transferase | - |
| Q9283_RS07785 (Q9283_07775) | - | 1612197..1612766 (+) | 570 | WP_229001934.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14442.76 Da Isoelectric Point: 9.0090
>NTDB_id=1102059 Q9283_RS07775 WP_011408068.1 1609977..1610402(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain A139]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
Nucleotide
Download Length: 426 bp
>NTDB_id=1102059 Q9283_RS07775 WP_011408068.1 1609977..1610402(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain A139]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
51.471 |
96.454 |
0.496 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.471 |
96.454 |
0.496 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.818 |
100 |
0.489 |
| comP | Acinetobacter baylyi ADP1 |
43.537 |
100 |
0.454 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.054 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
37.278 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae MS11 |
37.5 |
100 |
0.426 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.446 |
98.582 |
0.418 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.222 |
95.745 |
0.404 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.333 |
100 |
0.397 |
| pilA | Acinetobacter baumannii strain A118 |
38.298 |
100 |
0.383 |
| pilA | Pseudomonas aeruginosa PAK |
36 |
100 |
0.383 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.157 |
90.071 |
0.362 |