Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | Q9279_RS07710 | Genome accession | NZ_CP182523 |
| Coordinates | 1594283..1594708 (+) | Length | 141 a.a. |
| NCBI ID | WP_011408068.1 | Uniprot ID | - |
| Organism | Xanthomonas oryzae pv. oryzae strain D | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1583497..1597072 | 1594283..1594708 | within | 0 |
Gene organization within MGE regions
Location: 1583497..1597072
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9279_RS07640 (Q9279_07630) | - | 1583646..1583945 (+) | 300 | WP_125168747.1 | hypothetical protein | - |
| Q9279_RS07645 (Q9279_07635) | - | 1583942..1584271 (+) | 330 | WP_125168748.1 | hypothetical protein | - |
| Q9279_RS07650 (Q9279_07640) | - | 1584273..1585781 (+) | 1509 | WP_011258354.1 | RHS repeat domain-containing protein | - |
| Q9279_RS07655 (Q9279_07645) | - | 1585787..1586155 (+) | 369 | WP_011408064.1 | DUF6869 domain-containing protein | - |
| Q9279_RS07660 (Q9279_07650) | - | 1586325..1587293 (-) | 969 | WP_011258802.1 | IS5-like element ISXo1 family transposase | - |
| Q9279_RS07665 (Q9279_07655) | - | 1587410..1587556 (+) | 147 | Protein_1455 | IS701 family transposase | - |
| Q9279_RS07670 (Q9279_07660) | - | 1587674..1587895 (+) | 222 | Protein_1456 | IS4 family transposase | - |
| Q9279_RS07675 (Q9279_07665) | - | 1587985..1588941 (+) | 957 | WP_041182041.1 | IS30-like element IS1112a family transposase | - |
| Q9279_RS07680 (Q9279_07670) | - | 1588925..1589227 (+) | 303 | WP_158645227.1 | hypothetical protein | - |
| Q9279_RS07685 (Q9279_07675) | - | 1589227..1589721 (+) | 495 | WP_141062008.1 | DUF6714 family protein | - |
| Q9279_RS07690 (Q9279_07680) | - | 1589788..1591106 (-) | 1319 | Protein_1460 | IS701-like element ISXo15 family transposase | - |
| Q9279_RS07695 (Q9279_07685) | coaE | 1591177..1591785 (-) | 609 | WP_011258357.1 | dephospho-CoA kinase | - |
| Q9279_RS07700 (Q9279_07690) | - | 1591799..1592662 (-) | 864 | WP_011258358.1 | prepilin peptidase | - |
| Q9279_RS07705 (Q9279_07695) | pilC | 1592669..1593928 (-) | 1260 | WP_011408067.1 | type II secretion system F family protein | Machinery gene |
| Q9279_RS07710 (Q9279_07700) | pilA2 | 1594283..1594708 (+) | 426 | WP_011408068.1 | pilin | Machinery gene |
| Q9279_RS07715 (Q9279_07705) | - | 1594843..1596432 (+) | 1590 | WP_069959793.1 | phosphoethanolamine transferase | - |
| Q9279_RS07720 (Q9279_07710) | - | 1596443..1597072 (+) | 630 | WP_011408070.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14442.76 Da Isoelectric Point: 9.0090
>NTDB_id=1101945 Q9279_RS07710 WP_011408068.1 1594283..1594708(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain D]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
Nucleotide
Download Length: 426 bp
>NTDB_id=1101945 Q9279_RS07710 WP_011408068.1 1594283..1594708(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain D]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
51.471 |
96.454 |
0.496 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.471 |
96.454 |
0.496 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.818 |
100 |
0.489 |
| comP | Acinetobacter baylyi ADP1 |
43.537 |
100 |
0.454 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.054 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
37.278 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae MS11 |
37.5 |
100 |
0.426 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.446 |
98.582 |
0.418 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.222 |
95.745 |
0.404 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.333 |
100 |
0.397 |
| pilA | Acinetobacter baumannii strain A118 |
38.298 |
100 |
0.383 |
| pilA | Pseudomonas aeruginosa PAK |
36 |
100 |
0.383 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.157 |
90.071 |
0.362 |