Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   ACJWMD_RS00795 Genome accession   NZ_CP177182
Coordinates   130529..131026 (+) Length   165 a.a.
NCBI ID   WP_002886405.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 125529..136026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS00795 comX/sigX 130529..131026 (+) 498 WP_002886405.1 sigma factor Regulator
  ACJWMD_RS00800 - 131156..132142 (+) 987 WP_002886406.1 IS30 family transposase -
  ACJWMD_RS00805 - 132164..133006 (-) 843 WP_037605466.1 mechanosensitive ion channel family protein -
  ACJWMD_RS00810 tig 133149..134432 (+) 1284 WP_002886408.1 trigger factor -
  ACJWMD_RS00815 rpoE 134590..135165 (+) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20032.82 Da        Isoelectric Point: 5.1702

>NTDB_id=1085982 ACJWMD_RS00795 WP_002886405.1 130529..131026(+) (comX/sigX) [Streptococcus salivarius strain MRD6060]
MEQEVFVHAYEVVRPIVLKASRQYFIHLWDQADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1085982 ACJWMD_RS00795 WP_002886405.1 130529..131026(+) (comX/sigX) [Streptococcus salivarius strain MRD6060]
ATGGAACAAGAAGTTTTTGTTCATGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTTATCCA
TCTTTGGGACCAAGCTGATATGGAGCAAGAGGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGTTATTTTAAAACGAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGACAAGCCAATAGACAATGTTATATTGAAATTTCAGATATTGCTTTTTGTCTTCCGAATAAAGAGTTAGATGC
TGTTGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTTTGCTAGCTGGGGAGTGTTTTAGAGGTCGAAAAAAGATGATTCGAGAGTTAAAATTTTGGATGGTTGATTTTGATCCT
TACAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.