Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   ACJVG6_RS00790 Genome accession   NZ_CP177180
Coordinates   131439..131936 (+) Length   165 a.a.
NCBI ID   WP_002886405.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 126439..136936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS00790 comX/sigX 131439..131936 (+) 498 WP_002886405.1 sigma factor Regulator
  ACJVG6_RS00795 - 132066..133052 (+) 987 WP_002886406.1 IS30 family transposase -
  ACJVG6_RS00800 - 133074..133916 (-) 843 WP_037605466.1 mechanosensitive ion channel family protein -
  ACJVG6_RS00805 tig 134059..135342 (+) 1284 WP_002886408.1 trigger factor -
  ACJVG6_RS00810 rpoE 135500..136075 (+) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20032.82 Da        Isoelectric Point: 5.1702

>NTDB_id=1085844 ACJVG6_RS00790 WP_002886405.1 131439..131936(+) (comX/sigX) [Streptococcus salivarius strain MRD-KRBY]
MEQEVFVHAYEVVRPIVLKASRQYFIHLWDQADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1085844 ACJVG6_RS00790 WP_002886405.1 131439..131936(+) (comX/sigX) [Streptococcus salivarius strain MRD-KRBY]
ATGGAACAAGAAGTTTTTGTTCATGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTTATCCA
TCTTTGGGACCAAGCTGATATGGAGCAAGAGGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGTTATTTTAAAACGAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGACAAGCCAATAGACAATGTTATATTGAAATTTCAGATATTGCTTTTTGTCTTCCGAATAAAGAGTTAGATGC
TGTTGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTTTGCTAGCTGGGGAGTGTTTTAGAGGTCGAAAAAAGATGATTCGAGAGTTAAAATTTTGGATGGTTGATTTTGATCCT
TACAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.