Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   ACJVC4_RS00860 Genome accession   NZ_CP177179
Coordinates   153037..153534 (+) Length   165 a.a.
NCBI ID   WP_037597333.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 148037..158534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS00860 comX/sigX 153037..153534 (+) 498 WP_037597333.1 sigma factor Regulator
  ACJVC4_RS00865 - 153642..154484 (-) 843 WP_002889719.1 mechanosensitive ion channel family protein -
  ACJVC4_RS00870 tig 154627..155910 (+) 1284 WP_002889721.1 trigger factor -
  ACJVC4_RS00875 rpoE 156068..156643 (+) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  ACJVC4_RS00880 - 156896..158500 (+) 1605 WP_002889723.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20029.58 Da        Isoelectric Point: 5.1627

>NTDB_id=1085775 ACJVC4_RS00860 WP_037597333.1 153037..153534(+) (comX/sigX) [Streptococcus salivarius strain MRD-NRLLH]
MXQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDSTKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1085775 ACJVC4_RS00860 WP_037597333.1 153037..153534(+) (comX/sigX) [Streptococcus salivarius strain MRD-NRLLH]
ATGGANCAAGAAGTTTTTGTTCATGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAAGAAGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGATATTTTAAAACGAAATTTAGAAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGACAAGCTAATCGACAATGTTATATCGAAATTTCAGATATTGCTTTTTGTCTCCCAAATAAAGAGTTAGATGC
TGTTGATAGGCTTGTTTATGACGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATTCTACTAAGTTAGACC
GTTTGCTAGCTGGGGAGTGTTTTAGAGGTCGAAAAAAGATGATTCGAGAGTTAAAATTTTGGATGGTTGATTTTGATCCT
TACAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.