Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | ACJFUJ_RS07805 | Genome accession | NZ_CP174346 |
| Coordinates | 1610057..1610482 (+) | Length | 141 a.a. |
| NCBI ID | WP_011408068.1 | Uniprot ID | - |
| Organism | Xanthomonas oryzae pv. oryzae strain ZXooT | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1598110..1612846 | 1610057..1610482 | within | 0 |
Gene organization within MGE regions
Location: 1598110..1612846
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJFUJ_RS07730 (ACJFUJ_07730) | - | 1598259..1598558 (+) | 300 | WP_125168747.1 | hypothetical protein | - |
| ACJFUJ_RS07735 (ACJFUJ_07735) | - | 1598555..1598884 (+) | 330 | WP_125168748.1 | hypothetical protein | - |
| ACJFUJ_RS07740 (ACJFUJ_07740) | - | 1598886..1600394 (+) | 1509 | WP_011258354.1 | RHS repeat domain-containing protein | - |
| ACJFUJ_RS07745 (ACJFUJ_07745) | - | 1600400..1600768 (+) | 369 | WP_011408064.1 | DUF6869 domain-containing protein | - |
| ACJFUJ_RS07750 (ACJFUJ_07750) | - | 1600915..1601883 (-) | 969 | WP_011258802.1 | IS5-like element ISXo1 family transposase | - |
| ACJFUJ_RS07755 (ACJFUJ_07755) | - | 1602098..1603066 (-) | 969 | WP_011258188.1 | IS5-like element ISXo1 family transposase | - |
| ACJFUJ_RS07760 (ACJFUJ_07760) | - | 1603183..1603329 (+) | 147 | Protein_1474 | IS701 family transposase | - |
| ACJFUJ_RS07765 (ACJFUJ_07765) | - | 1603447..1603668 (+) | 222 | Protein_1475 | IS4 family transposase | - |
| ACJFUJ_RS07770 (ACJFUJ_07770) | - | 1603758..1604714 (+) | 957 | WP_274392183.1 | IS30-like element IS1112a family transposase | - |
| ACJFUJ_RS07775 (ACJFUJ_07775) | - | 1604698..1605000 (+) | 303 | WP_158645227.1 | hypothetical protein | - |
| ACJFUJ_RS07780 (ACJFUJ_07780) | - | 1605000..1605494 (+) | 495 | WP_141062008.1 | DUF6714 family protein | - |
| ACJFUJ_RS07785 (ACJFUJ_07785) | - | 1605561..1606880 (-) | 1320 | WP_155296483.1 | IS701 family transposase | - |
| ACJFUJ_RS07790 (ACJFUJ_07790) | coaE | 1606951..1607559 (-) | 609 | WP_011258357.1 | dephospho-CoA kinase | - |
| ACJFUJ_RS07795 (ACJFUJ_07795) | - | 1607573..1608436 (-) | 864 | WP_011258358.1 | A24 family peptidase | - |
| ACJFUJ_RS07800 (ACJFUJ_07800) | pilC | 1608443..1609702 (-) | 1260 | WP_011408067.1 | type II secretion system F family protein | Machinery gene |
| ACJFUJ_RS07805 (ACJFUJ_07805) | pilA2 | 1610057..1610482 (+) | 426 | WP_011408068.1 | pilin | Machinery gene |
| ACJFUJ_RS07810 (ACJFUJ_07810) | - | 1610617..1612206 (+) | 1590 | WP_069959793.1 | phosphoethanolamine transferase | - |
| ACJFUJ_RS07815 (ACJFUJ_07815) | - | 1612217..1612846 (+) | 630 | WP_011408070.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14442.76 Da Isoelectric Point: 9.0090
>NTDB_id=1076810 ACJFUJ_RS07805 WP_011408068.1 1610057..1610482(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain ZXooT]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
Nucleotide
Download Length: 426 bp
>NTDB_id=1076810 ACJFUJ_RS07805 WP_011408068.1 1610057..1610482(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain ZXooT]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
51.471 |
96.454 |
0.496 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.471 |
96.454 |
0.496 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.818 |
100 |
0.489 |
| comP | Acinetobacter baylyi ADP1 |
43.537 |
100 |
0.454 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.054 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
37.278 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae MS11 |
37.5 |
100 |
0.426 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.446 |
98.582 |
0.418 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.222 |
95.745 |
0.404 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.333 |
100 |
0.397 |
| pilA | Acinetobacter baumannii strain A118 |
38.298 |
100 |
0.383 |
| pilA | Pseudomonas aeruginosa PAK |
36 |
100 |
0.383 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.157 |
90.071 |
0.362 |