Detailed information NTG1041042

Bioinformatically predicted

Overview

• Name: pilA2
• Type: Machinery gene
• Locus tag: ABQX27_RS17260
• Genome accession: NZ_CP167997
• Coordinates: 3742164..3742589 (-)
• Length: 141 a.a.
• NCBI ID: WP_011408068.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzae strain WHRI 5233
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3739800..3748591	3742164..3742589	within	0

Gene organization within MGE regions

Location: 3739800..3748591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQX27_RS17250 (ABQX27_017250)	-	3739800..3740429 (-)	630	WP_011408070.1	hypothetical protein	-
ABQX27_RS17255 (ABQX27_017255)	-	3740440..3742029 (-)	1590	WP_011408069.1	phosphoethanolamine transferase	-
ABQX27_RS17260 (ABQX27_017260)	pilA2	3742164..3742589 (-)	426	WP_011408068.1	pilin	Machinery gene
ABQX27_RS17265 (ABQX27_017265)	pilC	3742944..3744203 (+)	1260	WP_011408067.1	type II secretion system F family protein	Machinery gene
ABQX27_RS17270 (ABQX27_017270)	-	3744210..3745073 (+)	864	WP_011258358.1	A24 family peptidase	-
ABQX27_RS17275 (ABQX27_017275)	coaE	3745087..3745695 (+)	609	WP_011258357.1	dephospho-CoA kinase	-
ABQX27_RS17280 (ABQX27_017280)	-	3745766..3746512 (+)	747	Protein_3307	IS701 family transposase	-
ABQX27_RS17285 (ABQX27_017285)	-	3746554..3747352 (+)	799	WP_094187777.1	IS5 family transposase	-
ABQX27_RS17290 (ABQX27_017290)	-	3747362..3747937 (+)	576	Protein_3309	IS701-like element ISXo15 family transposase	-
ABQX27_RS17295 (ABQX27_017295)	-	3748004..3748591 (-)	588	WP_372469676.1	DUF6714 family protein	-

Sequence

Protein

• Length: 141 a.a.
• Molecular weight: 14442.76 Da
• Isoelectric Point: 9.0090

>NTDB_id=1041042 ABQX27_RS17260 WP_011408068.1 3742164..3742589(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain WHRI 5233]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT

Nucleotide

• Length: 426 bp

>NTDB_id=1041042 ABQX27_RS17260 WP_011408068.1 3742164..3742589(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain WHRI 5233]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCGACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

• Pilin (bacterial filament) (Pilin) (35-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA2	Legionella pneumophila str. Paris	51.471	96.454	0.496
pilA2	Legionella pneumophila strain ERS1305867	51.471	96.454	0.496
pilA	Ralstonia pseudosolanacearum GMI1000	41.818	100	0.489
comP	Acinetobacter baylyi ADP1	43.537	100	0.454
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	34.054	100	0.447
pilE	Neisseria gonorrhoeae strain FA1090	37.278	100	0.447
pilE	Neisseria gonorrhoeae MS11	37.5	100	0.426
pilA/pilAI	Pseudomonas stutzeri DSM 10701	42.446	98.582	0.418
pilA/pilAII	Pseudomonas stutzeri DSM 10701	42.222	95.745	0.404
pilA/pilA1	Eikenella corrodens VA1	37.333	100	0.397
pilA	Acinetobacter baumannii strain A118	38.298	100	0.383
pilA	Pseudomonas aeruginosa PAK	36	100	0.383
pilA	Vibrio parahaemolyticus RIMD 2210633	40.157	90.071	0.362