Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   ABQZ63_RS15435 Genome accession   NZ_CP167822
Coordinates   3582389..3582781 (-) Length   130 a.a.
NCBI ID   WP_008576871.1    Uniprot ID   A0A6P0G6X8
Organism   Xanthomonas perforans strain WHRI 8957     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3577389..3587781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQZ63_RS15415 (ABQZ63_015415) - 3578269..3579141 (-) 873 WP_008577868.1 lysylphosphatidylglycerol synthase domain-containing protein -
  ABQZ63_RS15420 (ABQZ63_015420) - 3579180..3579878 (-) 699 WP_158070652.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  ABQZ63_RS15425 (ABQZ63_015425) - 3580000..3581832 (-) 1833 WP_008576878.1 hypothetical protein -
  ABQZ63_RS15430 (ABQZ63_015430) - 3581877..3582296 (-) 420 WP_033479197.1 pilin -
  ABQZ63_RS15435 (ABQZ63_015435) pilA/pilAI 3582389..3582781 (-) 393 WP_008576871.1 pilin Machinery gene
  ABQZ63_RS15440 (ABQZ63_015440) pilC 3583130..3584392 (+) 1263 WP_033479185.1 type II secretion system F family protein Machinery gene
  ABQZ63_RS15445 (ABQZ63_015445) - 3584399..3585262 (+) 864 WP_008576868.1 A24 family peptidase -
  ABQZ63_RS15450 (ABQZ63_015450) coaE 3585276..3585881 (+) 606 WP_008576866.1 dephospho-CoA kinase -
  ABQZ63_RS15455 (ABQZ63_015455) - 3585950..3587284 (-) 1335 WP_008576864.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 13565.77 Da        Isoelectric Point: 9.5775

>NTDB_id=1039605 ABQZ63_RS15435 WP_008576871.1 3582389..3582781(-) (pilA/pilAI) [Xanthomonas perforans strain WHRI 8957]
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQVTAGLAEITPGKTQFEVKTNEGSTMSTPAQIGLSSSTTRCGI
TVSATTIVCNLKGNAAKVKDKNVTLTRTASTGTWACSSSVDAKYKPAGCS

Nucleotide


Download         Length: 393 bp        

>NTDB_id=1039605 ABQZ63_RS15435 WP_008576871.1 3582389..3582781(-) (pilA/pilAI) [Xanthomonas perforans strain WHRI 8957]
ATGAAGAAGCAGCAAGGCTTTACGCTGATCGAACTGATGATCGTGGTCGCGATCATTGCCATCCTGGCCGCCATCGCGCT
GCCGATGTATCAGGACTATGTCGCCAAGTCGCAGGTGACTGCTGGTCTGGCCGAAATCACCCCGGGCAAGACTCAGTTCG
AAGTTAAGACCAACGAAGGCAGCACGATGAGCACCCCCGCGCAGATTGGTCTAAGCTCGTCCACCACGCGTTGTGGCATC
ACGGTTTCCGCTACTACCATTGTTTGCAACCTTAAAGGAAACGCGGCAAAGGTCAAGGATAAGAACGTGACACTGACGCG
TACCGCTAGCACGGGAACTTGGGCTTGCAGCAGCAGTGTTGACGCGAAGTACAAGCCGGCTGGCTGCAGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P0G6X8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

55.556

100

0.577
  pilA Acinetobacter baumannii strain A118

46.763

100

0.5
  pilA/pilAII Pseudomonas stutzeri DSM 10701

47.368

100

0.485
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

43.056

100

0.477
  pilA Vibrio cholerae strain A1552

43.056

100

0.477
  pilA Vibrio cholerae C6706

43.056

100

0.477
  pilA Pseudomonas aeruginosa PAK

41.611

100

0.477
  comP Acinetobacter baylyi ADP1

40.541

100

0.462
  pilA2 Legionella pneumophila str. Paris

37.931

100

0.423
  pilA2 Legionella pneumophila strain ERS1305867

37.931

100

0.423
  pilA/pilA1 Eikenella corrodens VA1

36.242

100

0.415
  pilA Vibrio parahaemolyticus RIMD 2210633

42.742

95.385

0.408
  pilE Neisseria gonorrhoeae strain FA1090

30.719

100

0.362

Multiple sequence alignment