Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   ACCP85_RS16250 Genome accession   NZ_CP167198
Coordinates   3755916..3756344 (-) Length   142 a.a.
NCBI ID   WP_039587436.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. ricini strain NCPPB 535     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3756689..3765347 3755916..3756344 flank 345


Gene organization within MGE regions


Location: 3755916..3765347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP85_RS16250 (ACCP85_16250) pilA2 3755916..3756344 (-) 429 WP_039587436.1 pilin Machinery gene
  ACCP85_RS16255 (ACCP85_16255) pilC 3756689..3757951 (+) 1263 WP_078515376.1 type II secretion system F family protein Machinery gene
  ACCP85_RS16260 (ACCP85_16260) - 3757958..3758821 (+) 864 WP_003491180.1 A24 family peptidase -
  ACCP85_RS16265 (ACCP85_16265) coaE 3758835..3759446 (+) 612 WP_277572157.1 dephospho-CoA kinase -
  ACCP85_RS16275 (ACCP85_16275) - 3761304..3765347 (+) 4044 WP_372168065.1 RHS repeat-associated core domain-containing protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14285.44 Da        Isoelectric Point: 9.1334

>NTDB_id=1038819 ACCP85_RS16250 WP_039587436.1 3755916..3756344(-) (pilA2) [Xanthomonas axonopodis pv. ricini strain NCPPB 535]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGVALNSGWTAPTATNNVTSVA
VDAGSGNITVTTTAKAGGGTIIFAPTAGGAALVSGTVPTDRISWTCTGGTLIAKYRPAECRT

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1038819 ACCP85_RS16250 WP_039587436.1 3755916..3756344(-) (pilA2) [Xanthomonas axonopodis pv. ricini strain NCPPB 535]
ATGAAGAAGCAACAAGGTTTTACTCTGATCGAACTGATGATCGTTGTCGCGATCATTGCTATTCTGGCGGCCATTGCGTT
GCCGGCTTACCAGGACTATACCGTCCGCGGCCGCGTCTCCGAGGCGATGGTTGCTGCGTCCGCTGCGAAGACGGTTGTGG
CTGAGAACGCCGCCAATGGTGTTGCGCTGAATAGCGGTTGGACTGCTCCCACCGCAACTAACAACGTCACCAGCGTCGCG
GTTGATGCCGGTTCCGGCAATATCACCGTGACCACCACCGCTAAGGCCGGTGGCGGCACCATCATCTTTGCCCCCACGGC
TGGCGGTGCGGCACTGGTCTCTGGCACCGTTCCAACTGATCGTATTTCCTGGACCTGCACGGGCGGCACCCTGATCGCCA
AGTACCGCCCGGCAGAATGCCGTACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

55.556

100

0.563
  pilA Ralstonia pseudosolanacearum GMI1000

50

100

0.563
  pilA2 Legionella pneumophila str. Paris

54.861

100

0.556
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

39.378

100

0.535
  comP Acinetobacter baylyi ADP1

47.134

100

0.521
  pilA/pilA1 Eikenella corrodens VA1

38.415

100

0.444
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.541

100

0.423
  pilA Acinetobacter baumannii strain A118

41.135

99.296

0.408
  pilA/pilAII Pseudomonas stutzeri DSM 10701

36.986

100

0.38
  pilA Vibrio cholerae C6706

33.766

100

0.366
  pilA Vibrio cholerae strain A1552

33.766

100

0.366
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

33.766

100

0.366

Multiple sequence alignment