Detailed information NTG1038820

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACCP85_RS16255
• Genome accession: NZ_CP167198
• Coordinates: 3756689..3757951 (+)
• Length: 420 a.a.
• NCBI ID: WP_078515376.1
• Uniprot ID: -
• Organism: Xanthomonas axonopodis pv. ricini strain NCPPB 535
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3756689..3765347	3756689..3757951	within	0

Gene organization within MGE regions

Location: 3756689..3765347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCP85_RS16255 (ACCP85_16255)	pilC	3756689..3757951 (+)	1263	WP_078515376.1	type II secretion system F family protein	Machinery gene
ACCP85_RS16260 (ACCP85_16260)	-	3757958..3758821 (+)	864	WP_003491180.1	A24 family peptidase	-
ACCP85_RS16265 (ACCP85_16265)	coaE	3758835..3759446 (+)	612	WP_277572157.1	dephospho-CoA kinase	-
ACCP85_RS16275 (ACCP85_16275)	-	3761304..3765347 (+)	4044	WP_372168065.1	RHS repeat-associated core domain-containing protein	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46118.61 Da
• Isoelectric Point: 10.2556

>NTDB_id=1038820 ACCP85_RS16255 WP_078515376.1 3756689..3757951(+) (pilC) [Xanthomonas axonopodis pv. ricini strain NCPPB 535]
MSVARNAIKKQTVDRSAGQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSVVKPKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRADIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMLFVVAGTIIGFIFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDSMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1263 bp

>NTDB_id=1038820 ACCP85_RS16255 WP_078515376.1 3756689..3757951(+) (pilC) [Xanthomonas axonopodis pv. ricini strain NCPPB 535]
ATGTCTGTCGCACGCAATGCCATTAAGAAGCAAACGGTGGACCGTAGTGCCGGTCAACAGCTACAACTGTTCCTCTGGGA
AGGAACGGACAAGCGCGGAATCAAGATGAAAGGCGAGCAGACTGCGCGCAACATGAACATGTTGCGCGCGGAGCTTCGCC
GTCAAGGCATCAATCCTTCAGTCGTGAAACCCAAGCCCAAGCCGCTTTTTGGCGCTGCAGGCAAGAAAATTACGCCTAAA
GACATCGCATTTTTCAGCCGCCAGATGGCGACTATGATGAAATCTGGAGTGCCTATTGTAGGCTCTCTTGAGATCATCGG
CGAAGGCCACAAAAACCCACGCATGAAAAAGATGGTGGGACAGGTTAGAGCCGATATCGAGGGCGGCTCGTCCCTTTACG
AATCTATCAGTAAACATCCGGTGCAGTTTGACGAACTCTACCGCAATCTTGTGCGAGCAGGTGAAGGCGCAGGCGTTCTA
GAGACTGTATTAGATACGGTTGCAACTTATAAAGAAAACATAGAAGCATTGAAGGGAAAGATCAAAAAGGCTTTATTTTA
TCCAGCCATGGTGATCGCAGTCGCCCTTATTGTCAGCGCCATTCTGCTAATTTTTGTCGTCCCTCAGTTCGAAGAAGTTT
TTAAAGGTTTCGGCGCCGAACTGCCTGCCTTTACCCAAATGATCGTTGGAGCGTCACGATTCATGGTGAGCTACTGGTGG
ATCATGCTGTTTGTTGTAGCAGGCACCATCATTGGGTTCATCTTTGCTTACAAACGCTCCCCGAGCATGCAACATACTAT
GGACAGATTAATATTGAGAGTACCTGTTATCGGTCAGATCATGCATAACAGTTCTATCGCGCGCTTCGCGCGTACGACTG
CCGTTACCTTTAAGGCCGGCGTTCCACTTGTGGAGGCACTAGGCATTGTTGCTGGCGCCACCGGTAATCGCGTCTACGAA
GATGCGGTACTCCGTATGCGCGACGATGTATCTGTGGGTTATCCAGTCAACATGGCAATGAAACAAGTCAACCTGTTTCC
GCACATGGTTATTCAAATGACTGCGATTGGCGAGGAAGCAGGTGCGCTCGATTCAATGCTTTTCAAAGTTGCTGAATACT
TTGAGCAAGAAGTCAACAATGCCGTCGATGCACTGAGCAGCCTGCTCGAGCCGATGATCATGGTCTTCATCGGGGTTGTC
GTAGGCGGCATGGTGATTGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (289-411)

• Type II secretion system (T2SS), protein F (T2SSF) (85-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.66	94.524	0.517
pilC	Legionella pneumophila strain ERS1305867	53.383	95	0.507
pilC	Acinetobacter baylyi ADP1	51.493	95.714	0.493
pilC	Acinetobacter baumannii D1279779	50.124	95.952	0.481
pilG	Neisseria gonorrhoeae MS11	44.638	95.476	0.426
pilG	Neisseria meningitidis 44/76-A	44.14	95.476	0.421
pilC	Vibrio campbellii strain DS40M4	40.931	97.143	0.398
pilC	Vibrio cholerae strain A1552	40.75	95.238	0.388