Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   AB8810_RS06105 Genome accession   NZ_CP166096
Coordinates   1415654..1416061 (+) Length   135 a.a.
NCBI ID   WP_369915838.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 3005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410654..1421061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8810_RS06085 (AB8810_06090) - 1411031..1412377 (+) 1347 WP_369915835.1 sensor histidine kinase -
  AB8810_RS06090 (AB8810_06095) coaE 1412506..1413126 (-) 621 WP_369915836.1 dephospho-CoA kinase -
  AB8810_RS06095 (AB8810_06100) - 1413140..1414003 (-) 864 WP_046978035.1 A24 family peptidase -
  AB8810_RS06100 (AB8810_06105) pilC 1414010..1415269 (-) 1260 WP_369915837.1 type II secretion system F family protein Machinery gene
  AB8810_RS06105 (AB8810_06110) pilA/pilAI 1415654..1416061 (+) 408 WP_369915838.1 pilin Machinery gene
  AB8810_RS06110 (AB8810_06115) - 1416129..1416539 (+) 411 WP_369915839.1 pilin -
  AB8810_RS06115 (AB8810_06120) - 1416580..1418439 (+) 1860 WP_369915840.1 hypothetical protein -
  AB8810_RS06120 (AB8810_06125) - 1418462..1419577 (-) 1116 WP_369915841.1 glycosyltransferase family 4 protein -
  AB8810_RS06125 (AB8810_06130) - 1419690..1420502 (+) 813 WP_369915842.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14161.20 Da        Isoelectric Point: 8.4935

>NTDB_id=1033351 AB8810_RS06105 WP_369915838.1 1415654..1416061(+) (pilA/pilAI) [Xanthomonas sp. NCPPB 3005]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQNYVRKSQVTAALSDITPGKTQFEVLTNEGKSITSATDIGLTAATSRCSA
IAPTAGDTGNINCVMIGGEGVSGKSIRWTRNASGNWTCSTDATDKYRPSTCTANL

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1033351 AB8810_RS06105 WP_369915838.1 1415654..1416061(+) (pilA/pilAI) [Xanthomonas sp. NCPPB 3005]
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTCGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCCTACCAGAACTACGTGCGCAAGTCGCAGGTCACCGCGGCGCTGTCCGACATCACCCCGGGCAAGACGCAGTTCG
AAGTGCTGACCAACGAAGGCAAGAGCATCACCAGTGCGACCGATATCGGTCTTACTGCAGCGACCAGTCGTTGCAGCGCG
ATCGCGCCTACCGCAGGCGATACCGGCAATATCAACTGCGTCATGATCGGCGGCGAAGGCGTTAGTGGGAAGTCCATTCG
TTGGACGCGCAATGCCTCCGGCAACTGGACTTGCTCGACCGACGCTACTGACAAGTACCGTCCGAGCACCTGCACCGCGA
ATCTGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

52.593

100

0.526
  pilA Acinetobacter baumannii strain A118

48.551

100

0.496
  pilA Vibrio cholerae C6706

44.828

100

0.481
  pilA Vibrio cholerae strain A1552

44.828

100

0.481
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44.828

100

0.481
  pilA Pseudomonas aeruginosa PAK

42.282

100

0.467
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.361

98.519

0.437
  pilA2 Legionella pneumophila strain ERS1305867

38.356

100

0.415
  pilA2 Legionella pneumophila str. Paris

38.462

100

0.407
  comP Acinetobacter baylyi ADP1

36.986

100

0.4
  pilE Neisseria gonorrhoeae MS11

33.766

100

0.385
  pilA Vibrio parahaemolyticus RIMD 2210633

41.667

88.889

0.37

Multiple sequence alignment