Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB8810_RS06100 Genome accession   NZ_CP166096
Coordinates   1414010..1415269 (-) Length   419 a.a.
NCBI ID   WP_369915837.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 3005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1409010..1420269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8810_RS06075 (AB8810_06080) - 1409888..1410346 (+) 459 WP_369915834.1 hypothetical protein -
  AB8810_RS06080 (AB8810_06085) - 1410361..1411038 (+) 678 WP_046978044.1 response regulator transcription factor -
  AB8810_RS06085 (AB8810_06090) - 1411031..1412377 (+) 1347 WP_369915835.1 sensor histidine kinase -
  AB8810_RS06090 (AB8810_06095) coaE 1412506..1413126 (-) 621 WP_369915836.1 dephospho-CoA kinase -
  AB8810_RS06095 (AB8810_06100) - 1413140..1414003 (-) 864 WP_046978035.1 A24 family peptidase -
  AB8810_RS06100 (AB8810_06105) pilC 1414010..1415269 (-) 1260 WP_369915837.1 type II secretion system F family protein Machinery gene
  AB8810_RS06105 (AB8810_06110) pilA/pilAI 1415654..1416061 (+) 408 WP_369915838.1 pilin Machinery gene
  AB8810_RS06110 (AB8810_06115) - 1416129..1416539 (+) 411 WP_369915839.1 pilin -
  AB8810_RS06115 (AB8810_06120) - 1416580..1418439 (+) 1860 WP_369915840.1 hypothetical protein -
  AB8810_RS06120 (AB8810_06125) - 1418462..1419577 (-) 1116 WP_369915841.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45762.08 Da        Isoelectric Point: 10.1825

>NTDB_id=1033350 AB8810_RS06100 WP_369915837.1 1414010..1415269(-) (pilC) [Xanthomonas sp. NCPPB 3005]
MSATRSAVPKQPVARTTNQQVPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGATGSKITPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWM
LLIVLVGTIVGFVFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1033350 AB8810_RS06100 WP_369915837.1 1414010..1415269(-) (pilC) [Xanthomonas sp. NCPPB 3005]
ATGTCCGCAACTCGTAGCGCAGTACCCAAACAGCCCGTCGCACGTACTACCAATCAGCAGGTGCCGTTTGTCTGGGAGGG
AACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACGCCGTCAGTGGTCAAGCCGAAACCCAAGCCCCTCTTTGGCGCTACCGGCAGCAAGATCACCCCGAAGGAC
ATCGCCTTTTTCAGCCGCCAGATGGCGACCATGATGAAGTCAGGCGTCCCCATCGTGGGATCGCTTGAGATCATTGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACCAGGTCCGCACCGATATCGAGGGCGGCTCGTCGCTCTATGAGG
CAATAAGCAAGCATCCGGTCCAGTTCGACGAGCTCTACCGCAACTTGGTCAAGGCCGGCGAAGGCGCTGGTGTGCTCGAA
ACCGTGCTGGAGACGGTCGCGACCTACAAGGAAAACATCGAAGCGCTAAAGGGTAAGATCAAGAAGGCCCTGTTCTACCC
GGCCATGGTCATGGCGGTCGCATTGCTGGTGAGCTCGATCCTACTGGTGTGGGTGGTGCCTCAGTTCGAGGACGTGTTCA
AGGGCTTTGGCGCCGAGTTACCCGCGTTTACGCAGATGATCGTGGCTGCATCGCGCTTCATGGTTGCCTATTGGTGGATG
CTGCTGATCGTCCTGGTTGGCACCATTGTCGGCTTCGTCTTCGCCTACAAGCGTTCGCCGTCGATGCAGCACGGCATGGA
CCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCGGTGGCGCGCTTCTCGCGGACGCTGGGCG
TGACCTTCCGCGCCGGCGTGCCACTGGTGGAAGCCCTGGACATCGTCGCCGGAGCCACCGGCAACAGCGTCTACGAGAAA
GCCGTGCTGCGCATGCGCGACGACGTCTCGGTGGGCTACCCGGTCAACGTGGCGATGAAGCAGGCCAACCTGTTCCCGCA
TATGGTCATCCAGATGACGGCGATCGGCGAAGAGGCCGGCGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAATACTTCG
AGCAGGAAGTGAACAATGCGGTCGACGCGCTGAGCAGCCTGATCGAGCCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTGATCGGCATGTACCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Acinetobacter baylyi ADP1

51.232

96.897

0.496
  pilC Legionella pneumophila strain ERS1305867

52.525

94.511

0.496
  pilC Acinetobacter baumannii D1279779

51.741

95.943

0.496
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilG Neisseria meningitidis 44/76-A

42.714

94.988

0.406
  pilC Vibrio cholerae strain A1552

42.065

94.749

0.399
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379

Multiple sequence alignment