Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | AB8814_RS06145 | Genome accession | NZ_CP166090 |
| Coordinates | 1473203..1473595 (+) | Length | 130 a.a. |
| NCBI ID | WP_205393982.1 | Uniprot ID | - |
| Organism | Xanthomonas hydrangeae strain NCPPB 4692 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1468203..1478595
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8814_RS06130 (AB8814_06130) | coaE | 1470098..1470706 (-) | 609 | WP_205393980.1 | dephospho-CoA kinase | - |
| AB8814_RS06135 (AB8814_06135) | - | 1470720..1471583 (-) | 864 | WP_002812278.1 | A24 family peptidase | - |
| AB8814_RS06140 (AB8814_06140) | pilC | 1471590..1472852 (-) | 1263 | WP_205393981.1 | type II secretion system F family protein | Machinery gene |
| AB8814_RS06145 (AB8814_06145) | pilA/pilAI | 1473203..1473595 (+) | 393 | WP_205393982.1 | pilin | Machinery gene |
| AB8814_RS06150 (AB8814_06150) | - | 1473687..1474106 (+) | 420 | WP_184354584.1 | pilin | - |
| AB8814_RS06155 (AB8814_06155) | - | 1474152..1475978 (+) | 1827 | WP_205393983.1 | hypothetical protein | - |
| AB8814_RS06160 (AB8814_06160) | - | 1475968..1476804 (+) | 837 | WP_205393984.1 | bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG | - |
| AB8814_RS06165 (AB8814_06165) | - | 1476801..1477718 (+) | 918 | WP_205393985.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 13496.70 Da Isoelectric Point: 9.5775
>NTDB_id=1033314 AB8814_RS06145 WP_205393982.1 1473203..1473595(+) (pilA/pilAI) [Xanthomonas hydrangeae strain NCPPB 4692]
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQVTAGLAEITPGKTQFEVKTNEGSTMSSAAQIGLAASTARCKV
TVSSTTIVCELKGNAAKVATKNVTLTRTSTSGTWACSSSVDAKYKPAGCS
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQVTAGLAEITPGKTQFEVKTNEGSTMSSAAQIGLAASTARCKV
TVSSTTIVCELKGNAAKVATKNVTLTRTSTSGTWACSSSVDAKYKPAGCS
Nucleotide
Download Length: 393 bp
>NTDB_id=1033314 AB8814_RS06145 WP_205393982.1 1473203..1473595(+) (pilA/pilAI) [Xanthomonas hydrangeae strain NCPPB 4692]
ATGAAGAAGCAGCAAGGCTTTACGCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTATCAGGACTATGTGGCAAAGTCGCAGGTGACTGCTGGTCTGGCCGAAATCACCCCGGGCAAGACTCAGTTCG
AAGTCAAGACAAACGAAGGCAGCACAATGAGTAGCGCGGCCCAGATTGGCCTCGCTGCGTCGACCGCGCGCTGCAAAGTC
ACCGTTAGCTCCACCACTATTGTCTGCGAGCTCAAAGGAAACGCGGCAAAGGTTGCTACCAAGAACGTGACTTTGACTCG
GACCTCTACCTCAGGTACCTGGGCTTGCAGCTCCAGCGTTGATGCGAAGTACAAGCCGGCCGGCTGCAGCTGA
ATGAAGAAGCAGCAAGGCTTTACGCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTATCAGGACTATGTGGCAAAGTCGCAGGTGACTGCTGGTCTGGCCGAAATCACCCCGGGCAAGACTCAGTTCG
AAGTCAAGACAAACGAAGGCAGCACAATGAGTAGCGCGGCCCAGATTGGCCTCGCTGCGTCGACCGCGCGCTGCAAAGTC
ACCGTTAGCTCCACCACTATTGTCTGCGAGCTCAAAGGAAACGCGGCAAAGGTTGCTACCAAGAACGTGACTTTGACTCG
GACCTCTACCTCAGGTACCTGGGCTTGCAGCTCCAGCGTTGATGCGAAGTACAAGCCGGCCGGCTGCAGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
55.556 |
100 |
0.577 |
| pilA | Acinetobacter baumannii strain A118 |
49.64 |
100 |
0.531 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
48.12 |
100 |
0.492 |
| pilA | Pseudomonas aeruginosa PAK |
39.597 |
100 |
0.454 |
| comP | Acinetobacter baylyi ADP1 |
39.189 |
100 |
0.446 |
| pilA | Vibrio cholerae C6706 |
39.161 |
100 |
0.431 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.161 |
100 |
0.431 |
| pilA | Vibrio cholerae strain A1552 |
39.161 |
100 |
0.431 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.584 |
100 |
0.431 |
| pilA2 | Legionella pneumophila str. Paris |
36.842 |
100 |
0.377 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.377 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.516 |
95.385 |
0.377 |