Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB8814_RS06140 Genome accession   NZ_CP166090
Coordinates   1471590..1472852 (-) Length   420 a.a.
NCBI ID   WP_205393981.1    Uniprot ID   -
Organism   Xanthomonas hydrangeae strain NCPPB 4692     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466590..1477852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8814_RS06130 (AB8814_06130) coaE 1470098..1470706 (-) 609 WP_205393980.1 dephospho-CoA kinase -
  AB8814_RS06135 (AB8814_06135) - 1470720..1471583 (-) 864 WP_002812278.1 A24 family peptidase -
  AB8814_RS06140 (AB8814_06140) pilC 1471590..1472852 (-) 1263 WP_205393981.1 type II secretion system F family protein Machinery gene
  AB8814_RS06145 (AB8814_06145) pilA/pilAI 1473203..1473595 (+) 393 WP_205393982.1 pilin Machinery gene
  AB8814_RS06150 (AB8814_06150) - 1473687..1474106 (+) 420 WP_184354584.1 pilin -
  AB8814_RS06155 (AB8814_06155) - 1474152..1475978 (+) 1827 WP_205393983.1 hypothetical protein -
  AB8814_RS06160 (AB8814_06160) - 1475968..1476804 (+) 837 WP_205393984.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  AB8814_RS06165 (AB8814_06165) - 1476801..1477718 (+) 918 WP_205393985.1 lysylphosphatidylglycerol synthase domain-containing protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45795.20 Da        Isoelectric Point: 10.2311

>NTDB_id=1033313 AB8814_RS06140 WP_205393981.1 1471590..1472852(-) (pilC) [Xanthomonas hydrangeae strain NCPPB 4692]
MSAVRSTIKNKPASINAEQLMSPFVWEGTDKRGVKMKGEQVARNANMLRAELRRQGITPSVVKAKPKPLFGAAGKKITPK
EIAFFSRQMATMMKSGVPIVGSLEIIGNGHKNPRMKQMVGQIRTDIEGGSSLHEAASKHPVQFDELYRNLIKAGEGAGVL
ETVLDTIASYKENLEALKGKIKKALFYPAMVVAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVSYWW
LMLLVIVGSIVGFIFAYKRSLAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYE
KAVLRMREDVSVGYPVNVSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPLIMVFIGTV
VGGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1033313 AB8814_RS06140 WP_205393981.1 1471590..1472852(-) (pilC) [Xanthomonas hydrangeae strain NCPPB 4692]
ATGTCGGCAGTCCGTAGCACCATCAAGAACAAACCGGCGAGCATCAACGCCGAACAACTCATGAGCCCGTTTGTCTGGGA
GGGGACAGACAAGCGCGGCGTGAAGATGAAGGGCGAACAGGTCGCTCGCAACGCCAATATGTTGCGTGCCGAACTCCGCC
GGCAGGGCATCACACCCAGCGTCGTCAAGGCCAAGCCCAAGCCGCTGTTTGGAGCGGCAGGCAAGAAGATCACGCCGAAG
GAAATTGCGTTCTTCAGCCGTCAGATGGCCACCATGATGAAGTCGGGAGTGCCGATTGTCGGGTCGCTGGAGATCATCGG
CAATGGTCACAAGAACCCGCGCATGAAGCAGATGGTGGGGCAGATCCGTACCGACATCGAAGGCGGATCTTCGCTGCACG
AAGCGGCAAGCAAGCATCCAGTGCAGTTTGACGAGCTGTATCGCAACCTGATCAAGGCCGGCGAAGGCGCTGGTGTGCTG
GAAACCGTCCTGGATACTATCGCCTCATACAAAGAGAACCTGGAAGCCCTTAAGGGCAAAATCAAGAAGGCCCTGTTCTA
CCCCGCGATGGTCGTGGCAGTAGCCTTGTTGGTGAGCTCGATACTCTTGATCTGGGTCGTTCCGCAGTTCGAGGATGTGT
TCAAGGGGTTTGGCGCGGAACTGCCGGCATTCACCCAACTGATCGTCAATGCATCCCGATTCATGGTCTCGTATTGGTGG
CTGATGCTGCTTGTGATCGTCGGTTCGATCGTGGGTTTCATCTTTGCCTATAAGCGCTCGCTTGCGATGCAGCATGGTAT
GGATCGGTTGGTGCTCAAGGTACCGATCATCGGCCAGATCATGCACAACAGCTCGATTGCGCGTTTTGCGCGCACTACCG
CGGTGACCTTCAAGGCAGGCGTGCCGCTGGTCGAAGCACTGGGCATCGTCGCCGGCGCCACCGGTAACTCGGTGTACGAG
AAAGCAGTGTTGCGCATGCGCGAGGATGTGTCGGTGGGCTATCCGGTCAACGTGTCGATGAAACAGGTCAACCTGTTTCC
GCATATGGTGATCCAGATGACTGCAATCGGCGAGGAAGCGGGCGCATTGGACGCCATGCTGTTCAAGGTGGCCGAGTACT
ACGAGCAGGAAGTGAATAATGCGGTGGATGCATTGAGCAGCCTCATCGAACCCTTGATCATGGTATTCATTGGTACAGTA
GTCGGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.736

95.714

0.505
  pilC Pseudomonas stutzeri DSM 10701

52.513

94.762

0.498
  pilC Legionella pneumophila strain ERS1305867

51.733

96.19

0.498
  pilC Acinetobacter baumannii D1279779

50.614

96.905

0.49
  pilG Neisseria gonorrhoeae MS11

43.719

94.762

0.414
  pilG Neisseria meningitidis 44/76-A

43.108

95

0.41
  pilC Vibrio cholerae strain A1552

41.814

94.524

0.395
  pilC Vibrio campbellii strain DS40M4

39.798

94.524

0.376

Multiple sequence alignment