Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   AB8P72_RS11650 Genome accession   NZ_CP166085
Coordinates   2738741..2739136 (-) Length   131 a.a.
NCBI ID   WP_369958294.1    Uniprot ID   -
Organism   Psychrobacter sp. CLB018     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2733741..2744136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8P72_RS11635 (AB8P72_11640) - 2735471..2736598 (-) 1128 WP_201541128.1 hypothetical protein -
  AB8P72_RS11640 (AB8P72_11645) aroB 2736807..2737922 (-) 1116 WP_369957786.1 3-dehydroquinate synthase -
  AB8P72_RS11645 (AB8P72_11650) aroK 2738012..2738575 (-) 564 WP_369957787.1 shikimate kinase AroK -
  AB8P72_RS11650 (AB8P72_11655) comQ 2738741..2739136 (-) 396 WP_369958294.1 hypothetical protein Machinery gene
  AB8P72_RS11655 (AB8P72_11660) pilQ 2739274..2740113 (-) 840 WP_369957788.1 secretin N-terminal domain-containing protein Machinery gene
  AB8P72_RS11660 (AB8P72_11665) - 2740110..2740871 (-) 762 WP_369957789.1 AMIN domain-containing protein -
  AB8P72_RS11665 (AB8P72_11670) pilM 2740947..2741411 (-) 465 WP_369957790.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14046.90 Da        Isoelectric Point: 4.8146

>NTDB_id=1033251 AB8P72_RS11650 WP_369958294.1 2738741..2739136(-) (comQ) [Psychrobacter sp. CLB018]
MPYQEASASGATTTSFKEAALSLEATPNITPDGKIGLQLLITNGTPTIINNQVAIAEDSISTNVIVEDGQTVVLGGVFKN
RTNNEVSKVPFLGDLPYVGRAFRKDVRNNAKEELLIFVTPKLINDGTSRLN

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1033251 AB8P72_RS11650 WP_369958294.1 2738741..2739136(-) (comQ) [Psychrobacter sp. CLB018]
ATTCCTTATCAAGAAGCCTCGGCCAGTGGCGCGACTACCACCAGCTTTAAAGAAGCGGCATTGAGCTTGGAAGCCACGCC
AAACATTACCCCAGACGGTAAAATTGGTTTGCAGCTGCTTATCACCAATGGCACACCGACTATTATTAACAATCAGGTCG
CGATTGCTGAAGATTCTATTTCAACCAATGTTATTGTGGAAGATGGGCAAACCGTTGTACTGGGCGGCGTCTTTAAAAAC
CGTACTAACAATGAGGTATCTAAAGTACCTTTCTTAGGCGACTTACCTTATGTTGGTCGTGCGTTCCGCAAGGATGTACG
TAACAATGCAAAAGAAGAGCTATTGATCTTTGTCACGCCAAAATTGATTAATGATGGTACTAGTCGCCTAAATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(7-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Acinetobacter baylyi ADP1

59.231

99.237

0.588
  pilQ Acinetobacter baumannii strain A118

52.239

100

0.534
  pilQ Acinetobacter baumannii D1279779

52.239

100

0.534
  pilQ Pseudomonas aeruginosa PAK

50.781

97.71

0.496
  pilQ Vibrio campbellii strain DS40M4

50

97.71

0.489
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

48.438

97.71

0.473
  pilQ Vibrio cholerae strain A1552

48.438

97.71

0.473
  pilQ Legionella pneumophila strain Lp02

47.692

99.237

0.473
  pilQ Legionella pneumophila strain ERS1305867

47.692

99.237

0.473
  comE Haemophilus influenzae 86-028NP

39.394

100

0.397
  comE Haemophilus influenzae Rd KW20

39.394

100

0.397
  pilQ Neisseria gonorrhoeae strain FA1090

37.405

100

0.374
  comE Glaesserella parasuis strain SC1401

38.095

96.183

0.366

Multiple sequence alignment