Detailed information NTG1033252

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: AB8P72_RS11655
• Genome accession: NZ_CP166085
• Coordinates: 2739274..2740113 (-)
• Length: 279 a.a.
• NCBI ID: WP_369957788.1
• Uniprot ID: -
• Organism: Psychrobacter sp. CLB018
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2734274..2745113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8P72_RS11635 (AB8P72_11640)	-	2735471..2736598 (-)	1128	WP_201541128.1	hypothetical protein	-
AB8P72_RS11640 (AB8P72_11645)	aroB	2736807..2737922 (-)	1116	WP_369957786.1	3-dehydroquinate synthase	-
AB8P72_RS11645 (AB8P72_11650)	aroK	2738012..2738575 (-)	564	WP_369957787.1	shikimate kinase AroK	-
AB8P72_RS11650 (AB8P72_11655)	comQ	2738741..2739136 (-)	396	WP_369958294.1	hypothetical protein	Machinery gene
AB8P72_RS11655 (AB8P72_11660)	pilQ	2739274..2740113 (-)	840	WP_369957788.1	secretin N-terminal domain-containing protein	Machinery gene
AB8P72_RS11660 (AB8P72_11665)	-	2740110..2740871 (-)	762	WP_369957789.1	AMIN domain-containing protein	-
AB8P72_RS11665 (AB8P72_11670)	pilM	2740947..2741411 (-)	465	WP_369957790.1	type IV pilus biogenesis protein PilM	-
AB8P72_RS11670 (AB8P72_11675)	-	2741625..2744300 (+)	2676	WP_369957791.1	penicillin-binding protein 1A	-
AB8P72_RS11675 (AB8P72_11680)	-	2744465..2745112 (-)	648	WP_238060093.1	hypothetical protein	-

Sequence

Protein

• Length: 279 a.a.
• Molecular weight: 30060.87 Da
• Isoelectric Point: 4.5933

>NTDB_id=1033252 AB8P72_RS11655 WP_369957788.1 2739274..2740113(-) (pilQ) [Psychrobacter sp. CLB018]
MINVPWDQALDIILKSKNLGKRENGNVILVAPSTELAEQEARELEAQQAVESYAPLRTEYIRLSYAKAADVLTLISQGSG
STGSSGSSSNTGNANSVDNNTLLSNRGTVTVDERTNTLIIKDVAESIENIHKLIGKIDIPVRQVMIEARIVSATDSFSKE
IGVRWGILSNGAANNRNLLVGGSNQTLWDLKDFDVETTTVNGQTVSYPKYDISRPDNLNVDLGVANPAGRIAFGLLSMSD
VMLDLELSALQADNRGEVISTPKILTADKQTAVVCQKVC

Nucleotide

• Length: 840 bp

>NTDB_id=1033252 AB8P72_RS11655 WP_369957788.1 2739274..2740113(-) (pilQ) [Psychrobacter sp. CLB018]
TTGATTAATGTCCCGTGGGATCAAGCGTTAGATATCATTCTAAAAAGTAAGAATCTTGGCAAACGTGAAAACGGTAATGT
GATTTTGGTCGCACCTTCGACTGAGCTTGCAGAACAAGAAGCGCGTGAGCTTGAAGCGCAGCAAGCGGTTGAGTCTTATG
CACCGCTACGCACGGAATACATTCGCTTAAGCTATGCTAAGGCAGCAGATGTATTGACGCTGATTTCTCAAGGCAGTGGT
TCAACAGGTAGCAGCGGCAGTAGTAGTAACACCGGCAACGCAAACTCTGTCGATAACAATACCTTGTTGTCTAACCGTGG
TACGGTAACGGTTGATGAGCGTACCAATACCTTGATTATCAAAGACGTTGCTGAAAGCATCGAAAATATTCATAAGCTGA
TTGGTAAAATTGATATTCCAGTCCGTCAAGTAATGATTGAAGCGCGTATCGTTAGCGCAACCGATAGCTTTAGTAAAGAG
ATTGGCGTGCGTTGGGGGATTTTATCAAACGGCGCTGCCAATAACCGTAACTTGTTAGTCGGTGGTAGCAATCAGACGCT
ATGGGATTTAAAAGACTTTGATGTAGAGACGACGACCGTCAATGGTCAAACAGTTTCTTATCCTAAGTATGACATCAGCC
GTCCTGATAACTTAAACGTTGATTTAGGGGTTGCCAACCCAGCGGGTAGGATTGCTTTTGGACTTCTTAGCATGTCAGAT
GTGATGCTCGATCTTGAATTATCGGCCCTACAAGCAGATAACCGCGGTGAAGTGATTTCGACGCCAAAGATTTTGACCGC
TGATAAACAAACGGCGGTGGTGTGTCAAAAAGTATGCTGA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (59-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Acinetobacter baumannii strain A118	58.947	100	0.602
pilQ	Acinetobacter baumannii D1279779	58.947	100	0.602
comQ	Acinetobacter baylyi ADP1	58.156	100	0.588
pilQ	Vibrio campbellii strain DS40M4	40.433	99.283	0.401
pilQ	Pseudomonas aeruginosa PAK	39.051	98.208	0.384
pilQ	Legionella pneumophila strain ERS1305867	36.17	100	0.366
pilQ	Vibrio cholerae strain A1552	37.226	98.208	0.366
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	37.226	98.208	0.366
pilQ	Legionella pneumophila strain Lp02	35.943	100	0.362