Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | AB4X21_RS01145 | Genome accession | NZ_CP163380 |
| Coordinates | 203321..203638 (+) | Length | 105 a.a. |
| NCBI ID | WP_369088025.1 | Uniprot ID | A0AB39LBR4 |
| Organism | Streptococcus sp. CP1998 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 198321..208638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4X21_RS01125 (AB4X21_01125) | - | 199618..200721 (+) | 1104 | WP_369088023.1 | glycosyl hydrolase family 8 | - |
| AB4X21_RS01130 (AB4X21_01130) | - | 200943..201332 (+) | 390 | WP_037607163.1 | DUF1033 family protein | - |
| AB4X21_RS01135 (AB4X21_01135) | comYA | 201419..202360 (+) | 942 | WP_369088024.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB4X21_RS01140 (AB4X21_01140) | comGB/cglB | 202293..203324 (+) | 1032 | WP_369088354.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AB4X21_RS01145 (AB4X21_01145) | comYC | 203321..203638 (+) | 318 | WP_369088025.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB4X21_RS01150 (AB4X21_01150) | comYD | 203628..204032 (+) | 405 | WP_003004513.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AB4X21_RS01155 (AB4X21_01155) | comGE | 203998..204285 (+) | 288 | WP_369088026.1 | competence type IV pilus minor pilin ComGE | - |
| AB4X21_RS01160 (AB4X21_01160) | comGF/cglF | 204275..204712 (+) | 438 | WP_369088027.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AB4X21_RS01165 (AB4X21_01165) | comGG | 204714..205151 (+) | 438 | WP_369088028.1 | competence type IV pilus minor pilin ComGG | - |
| AB4X21_RS01170 (AB4X21_01170) | comYH | 205182..206135 (+) | 954 | WP_369088029.1 | class I SAM-dependent methyltransferase | Machinery gene |
| AB4X21_RS01175 (AB4X21_01175) | - | 206187..207380 (+) | 1194 | WP_003004202.1 | acetate kinase | - |
| AB4X21_RS01180 (AB4X21_01180) | - | 207453..208184 (+) | 732 | WP_369088030.1 | CPBP family intramembrane glutamic endopeptidase | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11633.55 Da Isoelectric Point: 9.6953
>NTDB_id=1029399 AB4X21_RS01145 WP_369088025.1 203321..203638(+) (comYC) [Streptococcus sp. CP1998]
MKKLKTYKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVKETGNAAVVKVVESQAELYELNHTNDQATLAKLIADGN
ITNKQAESYRAYHAKNSGETRAVAD
MKKLKTYKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVKETGNAAVVKVVESQAELYELNHTNDQATLAKLIADGN
ITNKQAESYRAYHAKNSGETRAVAD
Nucleotide
Download Length: 318 bp
>NTDB_id=1029399 AB4X21_RS01145 WP_369088025.1 203321..203638(+) (comYC) [Streptococcus sp. CP1998]
ATGAAAAAATTAAAAACCTATAAGGTTAAAGCCTTTACACTTATTGAAATGTTGGTGGTCTTATTGATCATCAGTGTGCT
CTTATTGCTCTTTGTGCCGAATTTGACCAAGCAAAAAGACTCCGTGAAAGAGACAGGAAATGCAGCGGTTGTGAAGGTGG
TCGAAAGCCAGGCTGAATTGTATGAGCTCAATCATACCAATGATCAAGCCACTCTAGCAAAACTGATTGCGGATGGAAAT
ATTACCAACAAACAAGCAGAATCCTACCGTGCCTATCATGCAAAAAATAGTGGAGAAACTCGTGCGGTTGCAGATTAA
ATGAAAAAATTAAAAACCTATAAGGTTAAAGCCTTTACACTTATTGAAATGTTGGTGGTCTTATTGATCATCAGTGTGCT
CTTATTGCTCTTTGTGCCGAATTTGACCAAGCAAAAAGACTCCGTGAAAGAGACAGGAAATGCAGCGGTTGTGAAGGTGG
TCGAAAGCCAGGCTGAATTGTATGAGCTCAATCATACCAATGATCAAGCCACTCTAGCAAAACTGATTGCGGATGGAAAT
ATTACCAACAAACAAGCAGAATCCTACCGTGCCTATCATGCAAAAAATAGTGGAGAAACTCGTGCGGTTGCAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
75.238 |
100 |
0.752 |
| comYC | Streptococcus mutans UA159 |
72.381 |
100 |
0.724 |
| comYC | Streptococcus mutans UA140 |
72.381 |
100 |
0.724 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
67.273 |
100 |
0.705 |
| comGC/cglC | Streptococcus mitis SK321 |
66.972 |
100 |
0.695 |
| comGC/cglC | Streptococcus pneumoniae R6 |
66.055 |
100 |
0.686 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
66.055 |
100 |
0.686 |
| comGC/cglC | Streptococcus pneumoniae D39 |
66.055 |
100 |
0.686 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
65.138 |
100 |
0.676 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
58.654 |
99.048 |
0.581 |
| comYC | Streptococcus suis isolate S10 |
67.416 |
84.762 |
0.571 |
| comGC | Staphylococcus aureus MW2 |
45.918 |
93.333 |
0.429 |
| comGC | Staphylococcus aureus N315 |
45.918 |
93.333 |
0.429 |