Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | AB4X21_RS01170 | Genome accession | NZ_CP163380 |
| Coordinates | 205182..206135 (+) | Length | 317 a.a. |
| NCBI ID | WP_369088029.1 | Uniprot ID | A0AB39LBF5 |
| Organism | Streptococcus sp. CP1998 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 200182..211135
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4X21_RS01130 (AB4X21_01130) | - | 200943..201332 (+) | 390 | WP_037607163.1 | DUF1033 family protein | - |
| AB4X21_RS01135 (AB4X21_01135) | comYA | 201419..202360 (+) | 942 | WP_369088024.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB4X21_RS01140 (AB4X21_01140) | comGB/cglB | 202293..203324 (+) | 1032 | WP_369088354.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AB4X21_RS01145 (AB4X21_01145) | comYC | 203321..203638 (+) | 318 | WP_369088025.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB4X21_RS01150 (AB4X21_01150) | comYD | 203628..204032 (+) | 405 | WP_003004513.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AB4X21_RS01155 (AB4X21_01155) | comGE | 203998..204285 (+) | 288 | WP_369088026.1 | competence type IV pilus minor pilin ComGE | - |
| AB4X21_RS01160 (AB4X21_01160) | comGF/cglF | 204275..204712 (+) | 438 | WP_369088027.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AB4X21_RS01165 (AB4X21_01165) | comGG | 204714..205151 (+) | 438 | WP_369088028.1 | competence type IV pilus minor pilin ComGG | - |
| AB4X21_RS01170 (AB4X21_01170) | comYH | 205182..206135 (+) | 954 | WP_369088029.1 | class I SAM-dependent methyltransferase | Machinery gene |
| AB4X21_RS01175 (AB4X21_01175) | - | 206187..207380 (+) | 1194 | WP_003004202.1 | acetate kinase | - |
| AB4X21_RS01180 (AB4X21_01180) | - | 207453..208184 (+) | 732 | WP_369088030.1 | CPBP family intramembrane glutamic endopeptidase | - |
| AB4X21_RS01185 (AB4X21_01185) | folP | 208347..209300 (+) | 954 | WP_369088031.1 | dihydropteroate synthase | - |
| AB4X21_RS01190 (AB4X21_01190) | - | 209301..210611 (+) | 1311 | WP_369088032.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36017.90 Da Isoelectric Point: 4.2657
>NTDB_id=1029402 AB4X21_RS01170 WP_369088029.1 205182..206135(+) (comYH) [Streptococcus sp. CP1998]
MNFEKIEQAYTYLLENTQSIQNELSTNFYDALIEQNVMYLQGKTDLDIVKNNSQKLKELGLSKEEWRRAYQFLFMKAAQT
EPLQANHQFTPDAIGFIITFLIDQLAKSDQLDVLEVGSGTGNLAETIVNNSRLKIDYLGLEVDDLLIDLSASIADVMESS
VVFAQGDAVRPQVLKESDLIVSDLPIGYYPDDAIAQRYQVASSEGHTYAHHLMMEQALKYLKPQGVAIFLAPNNLLTSPQ
SDLLKVWLKDKAQILAMLTLPESLFSNPAYAKTIFVLRKQEEESVQPFVYPFTDLQDQDQVVHFMESFQNWLKDSEI
MNFEKIEQAYTYLLENTQSIQNELSTNFYDALIEQNVMYLQGKTDLDIVKNNSQKLKELGLSKEEWRRAYQFLFMKAAQT
EPLQANHQFTPDAIGFIITFLIDQLAKSDQLDVLEVGSGTGNLAETIVNNSRLKIDYLGLEVDDLLIDLSASIADVMESS
VVFAQGDAVRPQVLKESDLIVSDLPIGYYPDDAIAQRYQVASSEGHTYAHHLMMEQALKYLKPQGVAIFLAPNNLLTSPQ
SDLLKVWLKDKAQILAMLTLPESLFSNPAYAKTIFVLRKQEEESVQPFVYPFTDLQDQDQVVHFMESFQNWLKDSEI
Nucleotide
Download Length: 954 bp
>NTDB_id=1029402 AB4X21_RS01170 WP_369088029.1 205182..206135(+) (comYH) [Streptococcus sp. CP1998]
ATGAATTTCGAAAAAATTGAACAAGCCTATACCTATCTATTGGAAAACACTCAAAGTATTCAAAATGAATTGTCGACCAA
CTTTTATGACGCCTTGATTGAACAAAATGTCATGTATTTGCAGGGCAAGACAGACCTAGACATTGTCAAAAATAATAGCC
AAAAATTAAAAGAATTAGGTTTAAGTAAGGAAGAATGGCGCAGAGCCTACCAATTTCTATTTATGAAAGCTGCTCAGACA
GAACCTTTGCAAGCGAATCACCAGTTCACACCGGATGCGATTGGTTTTATCATTACATTTTTGATCGATCAGTTGGCTAA
AAGCGACCAACTGGATGTCTTAGAAGTGGGAAGTGGGACCGGAAATCTAGCTGAGACCATTGTCAATAATAGTCGTCTCA
AGATCGATTACTTAGGGTTGGAAGTGGATGATCTCTTGATTGACTTATCTGCTAGTATCGCAGATGTGATGGAGTCTAGC
GTTGTCTTTGCACAAGGAGATGCGGTGCGTCCGCAAGTGTTGAAAGAAAGTGACTTGATCGTTAGTGATCTTCCGATTGG
TTACTATCCAGATGATGCGATTGCACAGCGCTATCAGGTAGCGAGCTCCGAAGGCCATACCTATGCCCATCACCTCATGA
TGGAACAGGCTTTGAAATACCTGAAACCTCAAGGAGTAGCTATCTTTTTAGCCCCCAATAACCTCTTGACGAGCCCTCAG
AGTGATCTTTTAAAAGTTTGGTTGAAAGACAAGGCTCAAATTCTTGCCATGTTGACCTTGCCAGAATCTCTCTTTTCAAA
TCCAGCCTATGCTAAGACGATTTTCGTCCTACGAAAACAAGAAGAAGAGTCTGTTCAGCCCTTTGTCTATCCGTTTACCG
ATCTCCAGGATCAAGATCAGGTGGTTCACTTTATGGAAAGTTTCCAAAACTGGTTAAAGGATAGTGAAATTTGA
ATGAATTTCGAAAAAATTGAACAAGCCTATACCTATCTATTGGAAAACACTCAAAGTATTCAAAATGAATTGTCGACCAA
CTTTTATGACGCCTTGATTGAACAAAATGTCATGTATTTGCAGGGCAAGACAGACCTAGACATTGTCAAAAATAATAGCC
AAAAATTAAAAGAATTAGGTTTAAGTAAGGAAGAATGGCGCAGAGCCTACCAATTTCTATTTATGAAAGCTGCTCAGACA
GAACCTTTGCAAGCGAATCACCAGTTCACACCGGATGCGATTGGTTTTATCATTACATTTTTGATCGATCAGTTGGCTAA
AAGCGACCAACTGGATGTCTTAGAAGTGGGAAGTGGGACCGGAAATCTAGCTGAGACCATTGTCAATAATAGTCGTCTCA
AGATCGATTACTTAGGGTTGGAAGTGGATGATCTCTTGATTGACTTATCTGCTAGTATCGCAGATGTGATGGAGTCTAGC
GTTGTCTTTGCACAAGGAGATGCGGTGCGTCCGCAAGTGTTGAAAGAAAGTGACTTGATCGTTAGTGATCTTCCGATTGG
TTACTATCCAGATGATGCGATTGCACAGCGCTATCAGGTAGCGAGCTCCGAAGGCCATACCTATGCCCATCACCTCATGA
TGGAACAGGCTTTGAAATACCTGAAACCTCAAGGAGTAGCTATCTTTTTAGCCCCCAATAACCTCTTGACGAGCCCTCAG
AGTGATCTTTTAAAAGTTTGGTTGAAAGACAAGGCTCAAATTCTTGCCATGTTGACCTTGCCAGAATCTCTCTTTTCAAA
TCCAGCCTATGCTAAGACGATTTTCGTCCTACGAAAACAAGAAGAAGAGTCTGTTCAGCCCTTTGTCTATCCGTTTACCG
ATCTCCAGGATCAAGATCAGGTGGTTCACTTTATGGAAAGTTTCCAAAACTGGTTAAAGGATAGTGAAATTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
61.905 |
99.369 |
0.615 |
| comYH | Streptococcus mutans UA140 |
61.905 |
99.369 |
0.615 |