Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   AB4X21_RS01150 Genome accession   NZ_CP163380
Coordinates   203628..204032 (+) Length   134 a.a.
NCBI ID   WP_003004513.1    Uniprot ID   A0A414PH54
Organism   Streptococcus sp. CP1998     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 198628..209032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS01125 (AB4X21_01125) - 199618..200721 (+) 1104 WP_369088023.1 glycosyl hydrolase family 8 -
  AB4X21_RS01130 (AB4X21_01130) - 200943..201332 (+) 390 WP_037607163.1 DUF1033 family protein -
  AB4X21_RS01135 (AB4X21_01135) comYA 201419..202360 (+) 942 WP_369088024.1 competence type IV pilus ATPase ComGA Machinery gene
  AB4X21_RS01140 (AB4X21_01140) comGB/cglB 202293..203324 (+) 1032 WP_369088354.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB4X21_RS01145 (AB4X21_01145) comYC 203321..203638 (+) 318 WP_369088025.1 competence type IV pilus major pilin ComGC Machinery gene
  AB4X21_RS01150 (AB4X21_01150) comYD 203628..204032 (+) 405 WP_003004513.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB4X21_RS01155 (AB4X21_01155) comGE 203998..204285 (+) 288 WP_369088026.1 competence type IV pilus minor pilin ComGE -
  AB4X21_RS01160 (AB4X21_01160) comGF/cglF 204275..204712 (+) 438 WP_369088027.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB4X21_RS01165 (AB4X21_01165) comGG 204714..205151 (+) 438 WP_369088028.1 competence type IV pilus minor pilin ComGG -
  AB4X21_RS01170 (AB4X21_01170) comYH 205182..206135 (+) 954 WP_369088029.1 class I SAM-dependent methyltransferase Machinery gene
  AB4X21_RS01175 (AB4X21_01175) - 206187..207380 (+) 1194 WP_003004202.1 acetate kinase -
  AB4X21_RS01180 (AB4X21_01180) - 207453..208184 (+) 732 WP_369088030.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15164.50 Da        Isoelectric Point: 9.7563

>NTDB_id=1029400 AB4X21_RS01150 WP_003004513.1 203628..204032(+) (comYD) [Streptococcus sp. CP1998]
MQIKAFTLVETLLTLMIVSFIYLGLSGSIKTSFQQVEEKVFFAEFEHLYQESQKIALARQTELDVEVTARKIQTPYQTVE
IPDSVILQDPKTIRLDRAGGNSSLANVHFQTQRGVVTYQLSLGNGKIKKSIRSR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1029400 AB4X21_RS01150 WP_003004513.1 203628..204032(+) (comYD) [Streptococcus sp. CP1998]
TTGCAGATTAAGGCCTTCACCTTGGTGGAGACTCTTCTGACCTTGATGATCGTCAGTTTTATCTATCTGGGCTTATCGGG
ATCGATCAAGACGAGCTTTCAGCAGGTGGAAGAAAAAGTATTTTTTGCAGAGTTTGAACATCTCTATCAAGAAAGCCAAA
AGATAGCATTGGCAAGGCAAACGGAATTGGATGTTGAAGTGACTGCAAGGAAGATTCAAACGCCCTACCAGACGGTGGAG
ATTCCTGATTCTGTCATTTTGCAAGATCCTAAAACTATTCGATTGGACCGAGCAGGTGGCAATTCTTCGCTAGCCAATGT
TCACTTTCAGACACAGAGAGGAGTGGTGACTTATCAGCTTTCACTTGGAAATGGGAAAATTAAAAAAAGCATCCGTTCCC
GCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A414PH54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

50

97.015

0.485
  comGD/cglD Streptococcus mitis NCTC 12261

48.837

96.269

0.47
  comGD/cglD Streptococcus pneumoniae Rx1

48.819

94.776

0.463
  comGD/cglD Streptococcus pneumoniae D39

48.819

94.776

0.463
  comGD/cglD Streptococcus pneumoniae R6

48.819

94.776

0.463
  comGD/cglD Streptococcus mitis SK321

48.819

94.776

0.463
  comGD/cglD Streptococcus pneumoniae TIGR4

48.031

94.776

0.455
  comYD Streptococcus mutans UA140

44.615

97.015

0.433
  comYD Streptococcus mutans UA159

44.615

97.015

0.433

Multiple sequence alignment