Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB3456_RS08305 Genome accession   NZ_CP162632
Coordinates   1746389..1746559 (-) Length   56 a.a.
NCBI ID   WP_368679708.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain Hao 2022     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1741389..1751559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3456_RS08290 (AB3456_08290) xerC 1741659..1742549 (-) 891 WP_107551590.1 tyrosine recombinase XerC -
  AB3456_RS08295 (AB3456_08295) trmFO 1742668..1743975 (-) 1308 WP_107551589.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB3456_RS08300 (AB3456_08300) topA 1744118..1746184 (-) 2067 WP_017724285.1 type I DNA topoisomerase -
  AB3456_RS08305 (AB3456_08305) dprA 1746389..1746559 (-) 171 WP_368679708.1 DNA-processing protein DprA Machinery gene
  AB3456_RS08310 (AB3456_08310) - 1746552..1747259 (-) 708 WP_318754857.1 DNA-processing protein DprA -
  AB3456_RS08315 (AB3456_08315) sucD 1747509..1748414 (-) 906 WP_017724283.1 succinate--CoA ligase subunit alpha -
  AB3456_RS08320 (AB3456_08320) sucC 1748436..1749602 (-) 1167 WP_017724282.1 ADP-forming succinate--CoA ligase subunit beta -
  AB3456_RS08325 (AB3456_08325) - 1749710..1750480 (-) 771 WP_017724281.1 ribonuclease HII -
  AB3456_RS08330 (AB3456_08330) ylqF 1750487..1751347 (-) 861 WP_107551586.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 6080.92 Da        Isoelectric Point: 3.9644

>NTDB_id=1027728 AB3456_RS08305 WP_368679708.1 1746389..1746559(-) (dprA) [Staphylococcus pseudoxylosus strain Hao 2022]
MSSGTNITMDCALEQNREIYVLPGSIYNPMVQGNLVSAQEGAKIVVKACDILEDYS

Nucleotide


Download         Length: 171 bp        

>NTDB_id=1027728 AB3456_RS08305 WP_368679708.1 1746389..1746559(-) (dprA) [Staphylococcus pseudoxylosus strain Hao 2022]
GTGAGTAGTGGGACAAATATAACGATGGATTGTGCATTGGAACAAAATAGGGAAATATATGTATTACCGGGATCTATATA
CAATCCTATGGTTCAAGGAAATTTAGTTAGTGCACAAGAAGGAGCTAAGATTGTTGTGAAGGCTTGTGATATTTTAGAAG
ATTACAGTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(2-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

66.038

94.643

0.625
  dprA Staphylococcus aureus N315

66.038

94.643

0.625
  dprA Haemophilus influenzae Rd KW20

49.02

91.071

0.446
  dprA Glaesserella parasuis strain SC1401

45.283

94.643

0.429
  dprA Lactococcus lactis subsp. cremoris KW2

43.636

98.214

0.429
  dprA Legionella pneumophila strain ERS1305867

44.444

96.429

0.429
  dprA Bacillus subtilis subsp. subtilis str. 168

44.231

92.857

0.411
  dprA Neisseria meningitidis MC58

40.741

96.429

0.393
  dprA Neisseria meningitidis strain C311

40.741

96.429

0.393
  dprA Vibrio campbellii strain DS40M4

40.385

92.857

0.375
  dprA/cilB/dalA Streptococcus pneumoniae D39

38.182

98.214

0.375
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

38.182

98.214

0.375
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

38.182

98.214

0.375
  dprA/cilB/dalA Streptococcus pneumoniae R6

38.182

98.214

0.375
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

38.182

98.214

0.375
  dprA/cilB/dalA Streptococcus mitis SK321

38.182

98.214

0.375
  dprA Neisseria gonorrhoeae strain FA1090

38.889

96.429

0.375
  dprA Neisseria gonorrhoeae MS11

38.889

96.429

0.375

Multiple sequence alignment