Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AB3X08_RS05650 Genome accession   NZ_CP162490
Coordinates   1321724..1322137 (+) Length   137 a.a.
NCBI ID   WP_369936827.1    Uniprot ID   -
Organism   Xanthomonas tesorieronis strain DAR 34887     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316724..1327137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X08_RS05630 (AB3X08_05630) - 1317131..1318471 (+) 1341 WP_369936822.1 sensor histidine kinase -
  AB3X08_RS05635 (AB3X08_05635) coaE 1318607..1319227 (-) 621 WP_369936823.1 dephospho-CoA kinase -
  AB3X08_RS05640 (AB3X08_05640) - 1319241..1320104 (-) 864 WP_369936824.1 prepilin peptidase -
  AB3X08_RS05645 (AB3X08_05645) pilC 1320111..1321370 (-) 1260 WP_369936826.1 type II secretion system F family protein Machinery gene
  AB3X08_RS05650 (AB3X08_05650) pilA 1321724..1322137 (+) 414 WP_369936827.1 pilin Machinery gene
  AB3X08_RS05655 (AB3X08_05655) - 1322229..1322636 (+) 408 WP_369936828.1 pilin -
  AB3X08_RS05660 (AB3X08_05660) - 1322682..1324529 (+) 1848 WP_369936829.1 hypothetical protein -
  AB3X08_RS05665 (AB3X08_05665) - 1324602..1325207 (-) 606 WP_369938442.1 glycosyltransferase -
  AB3X08_RS05670 (AB3X08_05670) - 1325268..1325744 (-) 477 Protein_1114 glycosyltransferase family 4 protein -
  AB3X08_RS05675 (AB3X08_05675) - 1325978..1327132 (-) 1155 WP_369936830.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14267.48 Da        Isoelectric Point: 9.1672

>NTDB_id=1026466 AB3X08_RS05650 WP_369936827.1 1321724..1322137(+) (pilA) [Xanthomonas tesorieronis strain DAR 34887]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQNYVAKSQVTAGLADIRGAVTAYEEGIQSGKSGTPALADIGLNSSTPRCT
IAAPTIAYTADGGQVIQCTLKGNPKVVGKYVRLTRTSSGQWNCSTDADAKFKPTGCT

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1026466 AB3X08_RS05650 WP_369936827.1 1321724..1322137(+) (pilA) [Xanthomonas tesorieronis strain DAR 34887]
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTGGTCGCGATCATCGCTATTTTGGCGGCCATCGCGCT
GCCGGCTTACCAGAACTACGTCGCCAAGTCCCAGGTCACCGCGGGCCTCGCCGACATCCGTGGCGCCGTTACCGCGTACG
AGGAAGGCATCCAGTCGGGTAAGTCCGGTACGCCGGCTCTCGCCGACATCGGCCTGAACAGCAGTACGCCGCGTTGCACC
ATCGCTGCGCCGACCATTGCCTACACGGCTGACGGCGGCCAGGTCATCCAGTGCACCCTGAAGGGCAACCCGAAGGTCGT
CGGTAAGTACGTCAGGCTGACCCGTACCTCGTCGGGCCAGTGGAATTGCAGCACCGATGCCGATGCGAAGTTCAAGCCGA
CCGGTTGCACCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

50.725

100

0.511
  pilA Pseudomonas aeruginosa PAK

45.161

100

0.511
  pilA/pilAI Pseudomonas stutzeri DSM 10701

48.227

100

0.496
  pilA/pilAII Pseudomonas stutzeri DSM 10701

46.763

100

0.474
  pilA Vibrio cholerae C6706

39.474

100

0.438
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.474

100

0.438
  pilA Vibrio cholerae strain A1552

39.474

100

0.438
  pilA2 Legionella pneumophila strain ERS1305867

39.041

100

0.416
  comP Acinetobacter baylyi ADP1

38.095

100

0.409
  pilA2 Legionella pneumophila str. Paris

35.526

100

0.394
  pilA Ralstonia pseudosolanacearum GMI1000

38.519

98.54

0.38
  pilA Vibrio parahaemolyticus RIMD 2210633

40.65

89.781

0.365

Multiple sequence alignment