Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB3X08_RS05645 Genome accession   NZ_CP162490
Coordinates   1320111..1321370 (-) Length   419 a.a.
NCBI ID   WP_369936826.1    Uniprot ID   -
Organism   Xanthomonas tesorieronis strain DAR 34887     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1315111..1326370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X08_RS05620 (AB3X08_05620) - 1315988..1316446 (+) 459 WP_369936821.1 hypothetical protein -
  AB3X08_RS05625 (AB3X08_05625) - 1316461..1317138 (+) 678 WP_046978044.1 response regulator transcription factor -
  AB3X08_RS05630 (AB3X08_05630) - 1317131..1318471 (+) 1341 WP_369936822.1 sensor histidine kinase -
  AB3X08_RS05635 (AB3X08_05635) coaE 1318607..1319227 (-) 621 WP_369936823.1 dephospho-CoA kinase -
  AB3X08_RS05640 (AB3X08_05640) - 1319241..1320104 (-) 864 WP_369936824.1 prepilin peptidase -
  AB3X08_RS05645 (AB3X08_05645) pilC 1320111..1321370 (-) 1260 WP_369936826.1 type II secretion system F family protein Machinery gene
  AB3X08_RS05650 (AB3X08_05650) pilA 1321724..1322137 (+) 414 WP_369936827.1 pilin Machinery gene
  AB3X08_RS05655 (AB3X08_05655) - 1322229..1322636 (+) 408 WP_369936828.1 pilin -
  AB3X08_RS05660 (AB3X08_05660) - 1322682..1324529 (+) 1848 WP_369936829.1 hypothetical protein -
  AB3X08_RS05665 (AB3X08_05665) - 1324602..1325207 (-) 606 WP_369938442.1 glycosyltransferase -
  AB3X08_RS05670 (AB3X08_05670) - 1325268..1325744 (-) 477 Protein_1114 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45631.78 Da        Isoelectric Point: 10.1183

>NTDB_id=1026465 AB3X08_RS05645 WP_369936826.1 1320111..1321370(-) (pilC) [Xanthomonas tesorieronis strain DAR 34887]
MSATRSAVTKEPVTRNTSQQVSFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGSAGNKISSKD
IAFFSRQMATMMKSGVPIVGSLEIISSGHKNPRMKKMVEQIRADIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAAVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWLL
LLIVLLGSIVGFIFAYKRSPSMQHGMDRLILKVPVIGAIMHNSSIARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1026465 AB3X08_RS05645 WP_369936826.1 1320111..1321370(-) (pilC) [Xanthomonas tesorieronis strain DAR 34887]
ATGTCCGCAACTCGTAGCGCAGTCACAAAAGAGCCCGTCACACGCAACACCAGTCAACAGGTGTCGTTCGTCTGGGAGGG
CACGGACAAACGCGGCGTGAAGATGAAGGGCGAGCAGACCGCCAAGAATGCCAACCTGCTGCGGGCCGAGCTACGCCGCC
AGGGCATCACACCGTCGGTGGTCAAGCCCAAGCCCAAGCCGCTGTTCGGCTCCGCCGGCAACAAGATCTCATCGAAGGAC
ATAGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTCGGGTCGCTGGAAATCATTTCCAG
CGGGCATAAAAACCCGCGCATGAAGAAGATGGTGGAGCAGATCCGCGCGGACATCGAGGGCGGCTCTTCCCTCTATGAGG
CCATCAGCAAGCACCCCGTGCAGTTCGACGAGCTGTATCGCAATCTGGTCAAAGCTGGCGAAGGGGCCGGCGTACTCGAA
ACCGTGCTCGAAACTGTCGCCACCTACAAGGAAAACATCGAAGCGCTGAAAGGGAAGATCAAAAAGGCCCTGTTCTATCC
GGCGGCCGTTATGGCGGTAGCACTGCTGGTCAGCTCTATCCTGCTCGTCTGGGTCGTCCCACAGTTCGAGGATGTCTTCA
AGGGTTTCGGCGCCGAGCTGCCAGCCTTTACGCAGATGATCGTCGCGGCGTCGCGCTTCATGGTGTCGTACTGGCTGTTG
CTTTTGATCGTCTTGCTGGGAAGCATCGTGGGCTTCATTTTCGCCTACAAGCGCTCGCCTTCCATGCAACACGGCATGGA
CCGGCTGATACTGAAGGTGCCCGTTATTGGCGCCATCATGCACAACAGCTCTATCGCGCGTTTTTCGCGGACGCTGGGCG
TAACCTTCCGTGCCGGTGTCCCGCTGGTGGAGGCACTGGACATCGTCGCTGGCGCCACCGGCAACAGCGTTTATGAGAAG
GCCGTGCTACGCATGCGCGACGACGTGTCAGTGGGCTATCCGGTCAATGTGGCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACTGCCATCGGCGAAGAGGCGGGCGCGCTGGATGCGATGCTGTTCAAGGTCGCCGAGTATTTTG
AGCAGGAAGTAAACAACGCGGTCGATGCCTTGAGTAGCTTGCTAGAGCCCATGATTATGGTCTTCATCGGCACCATTGTC
GGCGGCATGGTCGTCGGCATGTACCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.97

96.42

0.511
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Acinetobacter baumannii D1279779

51.005

94.988

0.484
  pilC Acinetobacter baylyi ADP1

50.882

94.749

0.482
  pilG Neisseria gonorrhoeae MS11

43.035

95.943

0.413
  pilG Neisseria meningitidis 44/76-A

42.537

95.943

0.408
  pilC Vibrio cholerae strain A1552

42.714

94.988

0.406
  pilC Vibrio campbellii strain DS40M4

39.401

95.704

0.377

Multiple sequence alignment