Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   AB3G31_RS01930 Genome accession   NZ_CP162006
Coordinates   409845..410300 (-) Length   151 a.a.
NCBI ID   WP_367850275.1    Uniprot ID   -
Organism   Rhodoferax sp. WC2427     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404845..415300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G31_RS01915 (AB3G31_01915) - 405370..406452 (+) 1083 WP_367848549.1 adenylate/guanylate cyclase domain-containing protein -
  AB3G31_RS01920 (AB3G31_01920) - 406491..408002 (-) 1512 WP_367848550.1 PglL family O-oligosaccharyltransferase -
  AB3G31_RS01925 (AB3G31_01925) - 408014..409678 (-) 1665 WP_367848551.1 Wzy polymerase domain-containing protein -
  AB3G31_RS01930 (AB3G31_01930) pilA2 409845..410300 (-) 456 WP_367850275.1 pilin Machinery gene
  AB3G31_RS01935 (AB3G31_01935) - 410527..411318 (-) 792 WP_367848552.1 3',5'-cyclic-nucleotide phosphodiesterase -
  AB3G31_RS01940 (AB3G31_01940) - 411330..413540 (-) 2211 WP_367848553.1 CHASE2 domain-containing protein -
  AB3G31_RS01945 (AB3G31_01945) - 413608..414303 (-) 696 WP_367848554.1 FHA domain-containing protein -
  AB3G31_RS01950 (AB3G31_01950) - 414353..415138 (-) 786 WP_367848555.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 15287.48 Da        Isoelectric Point: 9.0339

>NTDB_id=1023446 AB3G31_RS01930 WP_367850275.1 409845..410300(-) (pilA2) [Rhodoferax sp. WC2427]
MKRSLQQGFTLIELMIVVAIIGILAAVALPAYQDYTVRAKATEVILAASSPKTSVSEAAQTLGQMPGTNSVTVDTQASTY
VASVSYAQTNSSVGVITATASIAREAKLAAGGTGSTAGTIVLTGTIQGNGQVVWVCSGTIASKYRPASCQG

Nucleotide


Download         Length: 456 bp        

>NTDB_id=1023446 AB3G31_RS01930 WP_367850275.1 409845..410300(-) (pilA2) [Rhodoferax sp. WC2427]
ATGAAACGTTCACTGCAACAAGGCTTTACCTTGATCGAATTGATGATCGTCGTGGCGATCATCGGTATTTTGGCGGCTGT
AGCCTTGCCTGCATACCAGGACTACACCGTGCGCGCAAAGGCCACGGAAGTGATCTTGGCGGCCTCTTCGCCAAAGACCA
GCGTTTCTGAAGCGGCCCAAACACTTGGTCAGATGCCGGGAACTAACAGCGTGACGGTCGATACGCAAGCATCCACATAC
GTGGCCTCGGTCAGTTATGCCCAAACTAATTCATCGGTCGGCGTTATCACTGCTACTGCCAGTATTGCTCGCGAAGCCAA
ATTGGCGGCAGGTGGTACGGGCAGTACCGCCGGAACGATTGTGTTGACAGGTACCATCCAGGGTAACGGCCAGGTTGTCT
GGGTATGCTCTGGAACCATTGCATCCAAATACCGCCCTGCAAGCTGCCAAGGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-150)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

52.703

98.013

0.517
  pilA2 Legionella pneumophila strain ERS1305867

51.351

98.013

0.503
  pilA Ralstonia pseudosolanacearum GMI1000

40.341

100

0.47
  comP Acinetobacter baylyi ADP1

46.309

98.675

0.457
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.046

100

0.43
  pilE Neisseria gonorrhoeae strain FA1090

37.059

100

0.417
  pilA Vibrio cholerae strain A1552

38.462

100

0.397
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.462

100

0.397
  pilA Vibrio cholerae C6706

38.462

100

0.397
  pilE Neisseria gonorrhoeae MS11

35.976

100

0.391
  pilA/pilA1 Eikenella corrodens VA1

37.342

100

0.391
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38

99.338

0.377
  pilA Haemophilus influenzae 86-028NP

35.443

100

0.371

Multiple sequence alignment