Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   DQN23_RS01725 Genome accession   NZ_LS483403
Coordinates   309488..309964 (+) Length   158 a.a.
NCBI ID   WP_111712607.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 304488..314964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS01725 (NCTC13774_00349) comX/sigX 309488..309964 (+) 477 WP_111712607.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQN23_RS01730 (NCTC13774_00350) - 309993..311351 (-) 1359 WP_020916223.1 aspartate kinase -
  DQN23_RS01735 (NCTC13774_00351) - 311448..312095 (+) 648 WP_111712629.1 HAD family phosphatase -
  DQN23_RS01740 (NCTC13774_00352) - 312286..313074 (+) 789 WP_111712630.1 enoyl-CoA hydratase -
  DQN23_RS01745 (NCTC13774_00353) - 313190..313624 (+) 435 WP_039695988.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQN23_RS01750 (NCTC13774_00354) - 313627..314601 (+) 975 WP_020916226.1 beta-ketoacyl-ACP synthase III -
  DQN23_RS01755 (NCTC13774_00355) - 314662..314886 (+) 225 WP_020916227.1 acyl carrier protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19479.33 Da        Isoelectric Point: 8.6905

>NTDB_id=1023049 DQN23_RS01725 WP_111712607.1 309488..309964(+) (comX/sigX) [Streptococcus lutetiensis strain NCTC13774]
MDFERYFQTVKPIILKLRRYYFVKLWDYEDWIQEGRIIFFELVEEHPDLLINEGKRYSYFKTKFSNHVKDIIRHQESFKR
KFNHMPYEEIGDISHCVPQVSFFEVADYVAYQDSLARLRRTLGREDRLKLEKVIRGERFEGKKDFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1023049 DQN23_RS01725 WP_111712607.1 309488..309964(+) (comX/sigX) [Streptococcus lutetiensis strain NCTC13774]
GTGGATTTTGAACGCTATTTTCAAACGGTTAAACCAATTATTTTAAAATTACGCCGTTATTATTTTGTCAAACTCTGGGA
TTATGAGGATTGGATTCAAGAGGGACGTATTATTTTCTTTGAACTTGTAGAGGAACATCCTGATCTCTTAATTAATGAAG
GCAAACGTTATAGCTACTTTAAAACAAAATTTTCTAACCATGTTAAAGATATTATCCGCCATCAGGAATCCTTTAAACGA
AAATTTAATCATATGCCTTATGAAGAAATTGGTGATATTAGTCACTGTGTACCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTACGTGGCTTATCAGGATAGCTTAGCACGTTTACGAAGAACATTGGGAAGAGAAGATAGACTGAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGACTTCTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGACCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.