Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ABG809_RS09230 Genome accession   NZ_CP159893
Coordinates   1862257..1862733 (-) Length   158 a.a.
NCBI ID   WP_003101723.1    Uniprot ID   -
Organism   Streptococcus iniae strain QMA0177     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1857257..1867733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG809_RS09195 (ABG809_09195) - 1857693..1858433 (-) 741 WP_003101706.1 class I SAM-dependent methyltransferase -
  ABG809_RS09200 (ABG809_09200) rsfS 1858494..1858847 (-) 354 WP_003101708.1 ribosome silencing factor -
  ABG809_RS09205 (ABG809_09205) yqeK 1858855..1859448 (-) 594 WP_003101710.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ABG809_RS09210 (ABG809_09210) - 1859445..1860076 (-) 632 Protein_1772 nicotinate-nucleotide adenylyltransferase -
  ABG809_RS09215 (ABG809_09215) yhbY 1860133..1860441 (-) 309 WP_016356114.1 ribosome assembly RNA-binding protein YhbY -
  ABG809_RS09220 (ABG809_09220) yqeH 1860573..1861624 (-) 1052 Protein_1774 ribosome biogenesis GTPase YqeH -
  ABG809_RS09225 (ABG809_09225) - 1861624..1862151 (-) 528 WP_003101721.1 YqeG family HAD IIIA-type phosphatase -
  ABG809_RS09230 (ABG809_09230) comX/sigX/comX2/sigX2 1862257..1862733 (-) 477 WP_003101723.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19006.03 Da        Isoelectric Point: 9.3137

>NTDB_id=1016673 ABG809_RS09230 WP_003101723.1 1862257..1862733(-) (comX/sigX/comX2/sigX2) [Streptococcus iniae strain QMA0177]
MEKVESLFNSVKPIILKFQKRYYIQLWDKEDWLQEGRVVLHALLTEFPDLTENDKRLYTYFKTKFSSYIKDVLRHQESYK
RKFNKMPYEEIGEVSHKVASKGLVLDDYIAYQAIVEELKCILNGTELEQFYALVRGERFSGRKALLRKIKPYFIDFKE

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1016673 ABG809_RS09230 WP_003101723.1 1862257..1862733(-) (comX/sigX/comX2/sigX2) [Streptococcus iniae strain QMA0177]
ATGGAAAAAGTTGAATCACTATTTAATTCAGTTAAACCAATTATTTTAAAATTTCAAAAACGTTATTATATACAACTTTG
GGATAAAGAAGACTGGTTACAAGAAGGTAGAGTTGTATTGCATGCTTTACTTACAGAATTTCCTGATTTGACAGAAAATG
ATAAAAGGCTTTATACATACTTTAAGACAAAATTTTCATCATATATTAAAGATGTCTTAAGACATCAAGAAAGTTACAAA
AGAAAGTTTAATAAAATGCCATATGAAGAAATCGGTGAAGTATCACATAAAGTTGCTTCAAAAGGATTAGTTCTTGATGA
TTATATTGCCTATCAAGCTATTGTTGAAGAATTGAAATGTATTTTGAATGGGACGGAATTAGAACAATTCTATGCTTTGG
TGAGAGGAGAAAGGTTTTCTGGAAGAAAAGCACTTCTTAGAAAAATTAAGCCATATTTTATTGATTTTAAAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

60.784

96.835

0.589
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

60.784

96.835

0.589
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

60.784

96.835

0.589
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

60.784

96.835

0.589
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

60.784

96.835

0.589
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

60.784

96.835

0.589
  comX/sigX Streptococcus mutans UA159

49.682

99.367

0.494
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

50.649

97.468

0.494
  comX Streptococcus sobrinus strain NIDR 6715-7

43.791

96.835

0.424
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

42.208

97.468

0.411
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

42.208

97.468

0.411
  comX/sigX Streptococcus suis P1/7

39.869

96.835

0.386
  comX/sigX Streptococcus suis D9

39.869

96.835

0.386
  comX/sigX Streptococcus suis isolate S10

39.869

96.835

0.386
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

39.333

94.937

0.373
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.411

95.57

0.367
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

38.667

94.937

0.367
  comX/comX2 Streptococcus pneumoniae Rx1

37.255

96.835

0.361
  comX/comX1 Streptococcus pneumoniae Rx1

37.255

96.835

0.361
  comX/comX2 Streptococcus pneumoniae D39

37.255

96.835

0.361
  comX/comX1 Streptococcus pneumoniae D39

37.255

96.835

0.361
  comX/comX2 Streptococcus pneumoniae R6

37.255

96.835

0.361
  comX/comX1 Streptococcus pneumoniae R6

37.255

96.835

0.361
  comX/comX2 Streptococcus pneumoniae TIGR4

37.255

96.835

0.361
  comX/comX1 Streptococcus pneumoniae TIGR4

37.255

96.835

0.361

Multiple sequence alignment