Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   H1W91_RS00870 Genome accession   NZ_LR822032
Coordinates   147407..147904 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus isolate STH_CIRM_1050     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 142407..152904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W91_RS00835 (STHERMO_0146) - 142947..143183 (-) 237 Protein_113 transposase -
  H1W91_RS00840 (STHERMO_0147) - 143470..143691 (+) 222 WP_002948904.1 DUF4649 family protein -
  H1W91_RS00845 - 143776..144098 (-) 323 Protein_115 transposase -
  H1W91_RS00850 (STHERMO_0150) - 144287..144613 (+) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  H1W91_RS00855 (STHERMO_0151) - 144737..145927 (+) 1191 WP_002949216.1 SAM-dependent methyltransferase -
  H1W91_RS00860 (STHERMO_0152) - 146188..146652 (-) 465 Protein_118 transposase family protein -
  H1W91_RS00865 - 147011..147115 (+) 105 Protein_119 IS200/IS605 family transposase -
  H1W91_RS00870 (STHERMO_0153) comX 147407..147904 (+) 498 WP_002949220.1 sigma factor Regulator
  H1W91_RS00875 (STHERMO_0154) - 148004..148846 (-) 843 WP_004197272.1 mechanosensitive ion channel family protein -
  H1W91_RS00880 (STHERMO_0155) tig 148987..150270 (+) 1284 WP_011680653.1 trigger factor -
  H1W91_RS00885 (STHERMO_0156) rpoE 150428..151009 (+) 582 WP_022096518.1 DNA-directed RNA polymerase subunit delta -
  H1W91_RS00890 (STHERMO_0157) - 151260..152864 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=1010782 H1W91_RS00870 WP_002949220.1 147407..147904(+) (comX) [Streptococcus thermophilus isolate STH_CIRM_1050]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1010782 H1W91_RS00870 WP_002949220.1 147407..147904(+) (comX) [Streptococcus thermophilus isolate STH_CIRM_1050]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.