NT genes of 'Avibacterium sp. 20-132'
In this species, transformation by exogenous DNA is regulated by the presence of a specific Uptake Signal Sequence (USS) (PMID: 17038178).
| Gene name | Gene type | Function | Related MGE | Organism | Genome accession | Locus tag | Protein ID |
|---|---|---|---|---|---|---|---|
 pilC |
Machinery gene | DNA binding and uptake | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS01225 | WP_250350748.1 |
| comO |
Machinery gene | DNA binding and uptake | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS01980 | WP_250350883.1 |
| comN |
Machinery gene | DNA binding and uptake | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS01985 | WP_250350884.1 |
| comE |
Machinery gene | DNA binding and uptake | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS02210 | WP_250350921.1 |
| comM |
Machinery gene | Involve in natural transformation | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS03360 | WP_250351129.1 |
| recA |
Machinery gene | Homologous recombination | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS04250 | WP_250351622.1 |
| comE1/comEA |
Machinery gene | DNA binding and uptake | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS05460 | WP_250351468.1 |
| dprA |
Machinery gene | DNA processing | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS05665 | WP_250351504.1 |
| ssb |
Machinery gene | DNA processing | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS05705 | WP_250351512.1 |
| pilA |
Machinery gene | DNA binding and uptake | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS06950 | WP_250349622.1 |
| pilB |
Machinery gene | DNA binding and uptake | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS06955 | WP_250349623.1 |
| ceuB |
Machinery gene | DNA binding and uptake | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS07910 | WP_268741075.1 |
| ssb |
Machinery gene | DNA processing | Prophage | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS08560 | WP_250349891.1 |
| ssb |
Machinery gene | DNA processing | ICE | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS09715 | WP_250349891.1 |
| rec2 |
Machinery gene | DNA binding and uptake | - | Avibacterium sp. 20-132 | NZ_CP091456 | L4F93_RS11985 | WP_250350448.1 |
Experimentally validated
Bioinformatically predicted