Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L4F93_RS07910 Genome accession   NZ_CP091456
Coordinates   1665289..1666245 (-) Length   318 a.a.
NCBI ID   WP_268741075.1    Uniprot ID   -
Organism   Avibacterium sp. 20-132     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1660289..1671245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4F93_RS07885 (L4F93_07885) - 1660822..1662309 (+) 1488 WP_250349776.1 carbon starvation protein A -
  L4F93_RS07890 (L4F93_07890) - 1662391..1662564 (+) 174 Protein_1516 Gfo/Idh/MocA family oxidoreductase -
  L4F93_RS07895 (L4F93_07895) - 1662635..1663549 (-) 915 WP_250349778.1 siderophore ABC transporter substrate-binding protein -
  L4F93_RS07900 (L4F93_07900) - 1663564..1664337 (-) 774 WP_250349779.1 ATP-binding cassette domain-containing protein -
  L4F93_RS07905 (L4F93_07905) - 1664328..1665296 (-) 969 WP_250349780.1 iron chelate uptake ABC transporter family permease subunit -
  L4F93_RS07910 (L4F93_07910) ceuB 1665289..1666245 (-) 957 WP_268741075.1 ABC transporter permease Machinery gene
  L4F93_RS07915 (L4F93_07915) - 1666452..1667591 (+) 1140 Protein_1521 NADH-dependent flavin oxidoreductase -
  L4F93_RS07925 (L4F93_07925) secG 1667936..1668274 (-) 339 WP_250349781.1 preprotein translocase subunit SecG -
  L4F93_RS07930 (L4F93_07930) - 1668408..1670336 (-) 1929 WP_250349782.1 DNA topoisomerase III -
  L4F93_RS07935 (L4F93_07935) - 1670454..1670783 (+) 330 WP_103853095.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34882.04 Da        Isoelectric Point: 9.8928

>NTDB_id=651446 L4F93_RS07910 WP_268741075.1 1665289..1666245(-) (ceuB) [Avibacterium sp. 20-132]
MIKRRYLFILLLLLSGISLFLGVSTVNLQGLFNFDAQQWQIFLISRLPRLVSILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILIAMLLFPSASMLLKTSVAILVSFCGTLLFMTLLSKLKFKDSIFVPLVGIMFGNIISAITAFIAYQQDL
LQNLSGWLQGDFSLVMAGRYEMLYFSIPALMLAYLFANRFSIVGMGQDFAVNLGLNYQQVLYLGLAIVATVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRALIYPYEISINAIVGVFGSAIFLYMLLKQRVQNG

Nucleotide


Download         Length: 957 bp        

>NTDB_id=651446 L4F93_RS07910 WP_268741075.1 1665289..1666245(-) (ceuB) [Avibacterium sp. 20-132]
ATGATTAAACGCCGTTATTTGTTTATCTTATTATTGTTACTTTCGGGTATTTCCCTCTTTTTAGGCGTAAGTACCGTTAA
TTTGCAAGGATTATTCAATTTTGATGCTCAGCAGTGGCAAATATTTTTGATTAGCCGCTTGCCCCGTTTAGTCAGTATTT
TGATTGCTGGGGCATCATTGAGTATTTGTGGATTGGTTATGCAGCAGTTAAGCCGTAATCGGTTTGTTTCCCCAACCACA
GCTGGTACGATGGATAGCGCAAGGCTGGGCATTTTAATTGCAATGTTACTGTTTCCTTCTGCTTCAATGTTACTCAAAAC
AAGTGTTGCAATTCTGGTTTCTTTTTGTGGCACATTGTTGTTTATGACATTGCTTTCTAAGCTGAAATTTAAAGATAGCA
TTTTTGTGCCGTTAGTCGGCATTATGTTTGGCAATATTATTAGCGCTATCACCGCATTTATTGCCTATCAACAAGATTTG
TTACAAAACCTTTCTGGTTGGTTGCAAGGCGATTTTTCCTTAGTAATGGCTGGGCGTTATGAAATGCTATATTTCAGCAT
TCCGGCATTGATGCTTGCTTATCTTTTTGCCAATCGTTTTTCCATTGTAGGAATGGGGCAGGATTTTGCAGTCAATCTTG
GTTTGAACTATCAGCAAGTGCTTTATTTAGGCTTAGCCATAGTTGCAACGGTATCATCGATCATCATTGTCTCGGTGGGC
GTTATCCCCTTTCTCGGACTGATTATTCCCAATATTGTTACCCTTTATTTGGGGGATAATTTGAAAAAAGTGCTGTCTCA
CACCGCACTTTTAGGTGCTGTTTTTGTTCTGTTTTGCGATATTCTGGGGCGCGCGTTGATTTATCCTTACGAAATTTCCA
TTAACGCCATTGTGGGCGTATTCGGCAGTGCCATTTTTCTTTATATGCTGTTAAAACAAAGGGTTCAAAATGGTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.581

97.484

0.513