Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   L4F93_RS02210 Genome accession   NZ_CP091456
Coordinates   484654..486066 (+) Length   470 a.a.
NCBI ID   WP_250350921.1    Uniprot ID   -
Organism   Avibacterium sp. 20-132     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479654..491066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4F93_RS02185 (L4F93_02185) - 479729..482302 (-) 2574 WP_250350916.1 penicillin-binding protein 1A -
  L4F93_RS02190 (L4F93_02190) - 482460..483248 (+) 789 WP_250350917.1 competence protein ComA -
  L4F93_RS02195 (L4F93_02195) - 483238..483762 (+) 525 WP_250350918.1 hypothetical protein -
  L4F93_RS02200 (L4F93_02200) - 483743..484282 (+) 540 WP_250350919.1 hypothetical protein -
  L4F93_RS02205 (L4F93_02205) - 484279..484644 (+) 366 WP_250350920.1 pilus assembly protein PilP -
  L4F93_RS02210 (L4F93_02210) comE 484654..486066 (+) 1413 WP_250350921.1 type IV pilus secretin PilQ Machinery gene
  L4F93_RS02215 (L4F93_02215) aroK 486202..486750 (+) 549 WP_326938203.1 shikimate kinase AroK -
  L4F93_RS02220 (L4F93_02220) aroB 486771..487859 (+) 1089 WP_250351603.1 3-dehydroquinate synthase -
  L4F93_RS02225 (L4F93_02225) - 487865..488731 (+) 867 WP_250350923.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  L4F93_RS02230 (L4F93_02230) - 488719..489033 (-) 315 WP_250350924.1 DciA family protein -
  L4F93_RS02235 (L4F93_02235) secM 489140..489451 (+) 312 WP_250350925.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51522.11 Da        Isoelectric Point: 8.7180

>NTDB_id=651429 L4F93_RS02210 WP_250350921.1 484654..486066(+) (comE) [Avibacterium sp. 20-132]
MRLLKCGAFFLSFSLLVSASEKTNETFSIRLQQAPLVHTVQQLAAQQNVNLVIDDELQGSISLQLQQTTLAQFLQVVAKI
KQLQFWQENGIYYLSKATPHSSSESANPLPIEFVDTLPEMSAPVLPSLSTMTIKLHYAKASEMMKTLTSGSGSLLSGNGS
ISFDDRSNLLIIKDEKAILKQIKGIVTEMDKPIEQIAIEARIVTISDESLKELGVRWGIFTPTEASHKVSGSLNANGFTN
ITDNLNVNFATTNTPAGSVALQIAKINGRLLDLELTALERENSVEIIASPSLLTTNKKSASIKQGTEIPYVVNNSKNDSQ
TIEFREAVLGLDVTPHLSKDNGILLDLVVSQNAPGRRVAYGENEVIAIDKQEINTQVFAQDGETIVLGGIFHDTITKALD
KVPVLGDIPVIKRLFSKEVERHQKRELVIFVTPHLIKKGQRAEKPSAVKNPPKNHRTSPSSLKISSKSRK

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=651429 L4F93_RS02210 WP_250350921.1 484654..486066(+) (comE) [Avibacterium sp. 20-132]
ATGCGATTATTAAAGTGCGGTGCATTTTTTCTGAGTTTTTCATTACTTGTCTCAGCAAGCGAAAAAACCAATGAAACCTT
TTCAATTCGCTTACAGCAAGCCCCTTTGGTACATACCGTGCAACAACTCGCGGCACAACAAAACGTGAATTTAGTGATCG
ATGATGAATTGCAAGGCTCGATTTCGTTACAACTGCAACAAACAACGCTTGCTCAATTTCTGCAAGTGGTGGCTAAAATT
AAACAACTCCAATTTTGGCAGGAAAATGGCATTTATTATTTGAGCAAAGCCACGCCACATTCTTCATCAGAAAGTGCCAA
TCCCCTTCCCATTGAATTTGTCGATACATTGCCCGAAATGAGCGCCCCCGTGTTGCCCTCGCTATCCACAATGACGATAA
AATTACACTATGCTAAAGCCTCTGAAATGATGAAAACACTGACTTCAGGCAGTGGTTCATTGCTTTCTGGAAATGGCAGT
ATAAGCTTTGACGATCGTAGCAACCTCTTGATCATTAAAGATGAAAAAGCAATATTGAAACAAATTAAAGGGATAGTAAC
GGAAATGGATAAACCCATTGAGCAAATCGCTATTGAAGCGCGTATTGTTACCATTAGCGATGAAAGCCTGAAAGAACTTG
GCGTGCGTTGGGGGATTTTCACGCCGACAGAGGCAAGCCATAAAGTGAGTGGCAGTCTGAATGCGAATGGCTTTACCAAT
ATTACGGATAATCTTAATGTGAATTTTGCCACCACGAATACGCCCGCCGGCTCAGTGGCACTGCAAATTGCCAAAATTAA
TGGACGATTGCTTGATTTAGAATTAACTGCGTTGGAGCGCGAAAATAGCGTGGAAATCATCGCTAGCCCAAGCTTGCTTA
CAACGAATAAGAAAAGTGCTAGCATCAAGCAAGGGACGGAAATCCCTTATGTGGTGAATAATAGTAAAAATGATAGCCAG
ACCATTGAGTTTCGCGAAGCCGTGCTAGGATTAGACGTTACCCCTCATTTATCAAAAGATAACGGCATTTTACTGGATTT
AGTCGTCAGCCAAAATGCGCCGGGGCGACGTGTTGCTTACGGTGAAAACGAAGTGATTGCCATTGATAAGCAAGAAATTA
ACACGCAAGTCTTTGCCCAAGATGGGGAAACCATTGTGTTAGGGGGTATTTTCCACGACACCATTACCAAAGCCTTAGAT
AAAGTGCCTGTGCTAGGTGATATTCCCGTGATTAAACGTTTATTCAGTAAAGAAGTGGAACGTCATCAAAAACGGGAACT
GGTTATTTTCGTTACACCACATTTGATCAAAAAAGGGCAACGCGCAGAAAAACCAAGTGCGGTGAAAAATCCACCAAAAA
ATCACCGCACTTCGCCATCTTCTTTGAAAATTTCGTCCAAATCTCGTAAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(277-437)

Bacterial type II/III secretion system short domain (Secretin_N)

(130-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

67.342

94.468

0.636
  comE Haemophilus influenzae 86-028NP

66.667

94.468

0.63
  comE Glaesserella parasuis strain SC1401

51.487

92.979

0.479