Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L4F93_RS03360 Genome accession   NZ_CP091456
Coordinates   724433..725968 (+) Length   511 a.a.
NCBI ID   WP_250351129.1    Uniprot ID   -
Organism   Avibacterium sp. 20-132     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 719433..730968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4F93_RS03330 (L4F93_03330) - 719941..720204 (+) 264 WP_250351124.1 hypothetical protein -
  L4F93_RS03335 (L4F93_03335) bamE 720510..721365 (-) 856 Protein_657 outer membrane protein assembly factor BamE -
  L4F93_RS03340 (L4F93_03340) - 721468..721695 (-) 228 WP_250351125.1 YadA C-terminal domain-containing protein -
  L4F93_RS03345 (L4F93_03345) - 721871..722317 (+) 447 WP_250351126.1 hypothetical protein -
  L4F93_RS03350 (L4F93_03350) yihA 722586..723218 (+) 633 WP_250351127.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  L4F93_RS03355 (L4F93_03355) - 723266..724192 (-) 927 WP_250351128.1 Abi family protein -
  L4F93_RS03360 (L4F93_03360) comM 724433..725968 (+) 1536 WP_250351129.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L4F93_RS03365 (L4F93_03365) - 726033..726719 (-) 687 WP_250351130.1 metallophosphoesterase -
  L4F93_RS03370 (L4F93_03370) nadR 726728..727999 (-) 1272 WP_250351131.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  L4F93_RS03375 (L4F93_03375) - 728079..728342 (-) 264 WP_250351132.1 accessory factor UbiK family protein -
  L4F93_RS03380 (L4F93_03380) ribB 728699..729340 (+) 642 WP_250351133.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
  L4F93_RS03385 (L4F93_03385) rplQ 729555..729944 (-) 390 WP_103854517.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 56189.88 Da        Isoelectric Point: 10.0726

>NTDB_id=651431 L4F93_RS03360 WP_250351129.1 724433..725968(+) (comM) [Avibacterium sp. 20-132]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNANFKYPAKRITVNLAPADLPKDGGR
FDLPIAIGILAASEQVNPERLKQFELLGELALTGQLRGVHGIIPAILAAKKVRRCPIIARQNANEAALVADQKSYFAQNL
LEVVQFINEQEKLPLATDLTTQSAVDFSFKNQADLTDIIGQQHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTGLLP
EMTEQEAIETASVTSLVQNELNFQNWKQRPFRAPHHSASLPALVGGGTIPRPGEISLSHNGVLFLDELPEFDRKVLDALR
QPLESGEIIISRANAKICFPAKFQLIAAMNPSPTGHYTGVHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGALQH
IENKGETSEQVRSKIIKVREIQFARAGKINAHLSSKEIERDCKISSQDGIFLENTLTQLGLSVRAYHRILKVARTIADLN
NEKQIQRPHLAEALSYRAMDRLLQKLSKNLG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=651431 L4F93_RS03360 WP_250351129.1 724433..725968(+) (comM) [Avibacterium sp. 20-132]
ATGTCATTAGCCATTGTTTATAGCCGTGCGTCAATGGGGGTGCAAGCGCCGCTGGTTACTATTGAAGTGCATTTAAGCAA
CGGGAAACCGGGTTTTACCCTTGTGGGATTGCCAGAAAAAACGGTGAAAGAAGCACAAGATCGCGTGCGAAGTGCGTTAT
TGAATGCCAATTTTAAATACCCTGCCAAGCGGATTACAGTGAACCTTGCACCCGCAGATTTACCTAAAGACGGTGGGCGT
TTTGATCTGCCTATTGCCATTGGGATTTTAGCTGCTTCTGAACAAGTTAATCCTGAACGTTTAAAGCAATTTGAGCTACT
GGGTGAACTGGCTCTAACAGGTCAATTACGTGGAGTTCACGGCATTATTCCAGCGATTTTAGCGGCTAAAAAAGTGCGCC
GTTGCCCGATTATTGCCAGACAAAATGCCAATGAAGCGGCTTTAGTCGCCGATCAAAAAAGTTATTTTGCGCAGAATTTA
TTAGAGGTGGTGCAATTTATTAATGAACAAGAAAAACTGCCCCTTGCCACGGATTTAACCACGCAAAGTGCGGTGGATTT
TTCTTTCAAAAATCAAGCAGATTTAACGGATATTATTGGTCAGCAACACGCTAAACGAGCCTTAACCATCGCCGCTGCAG
GGCAACATAATTTATTGCTTTTAGGGCCGCCTGGTACGGGAAAAACAATGCTGGCAAGCCGTTTAACGGGGTTATTGCCA
GAAATGACCGAGCAAGAAGCCATAGAAACTGCTTCCGTTACTAGCCTTGTACAAAATGAGCTAAATTTTCAAAACTGGAA
ACAACGCCCATTTCGTGCGCCCCACCACAGTGCGTCTTTGCCTGCTTTGGTGGGTGGGGGAACGATCCCAAGGCCGGGGG
AAATCTCCCTTTCGCATAATGGCGTGTTGTTTTTAGATGAGCTACCAGAGTTTGATCGCAAAGTGCTAGATGCTTTGCGT
CAGCCGTTAGAAAGTGGCGAAATCATTATTTCGCGCGCCAATGCGAAAATCTGTTTTCCAGCAAAATTTCAACTGATTGC
GGCAATGAACCCAAGCCCTACTGGACATTACACTGGTGTGCATAATCGCACTTCACCACAACAAGTGATGCGCTATTTGA
ATCGTCTTTCAGGGCCGTTTTTAGATCGCTTTGATTTATCCATTGAAGTTCCCCTTTTGCCTAAAGGTGCATTACAACAC
ATTGAAAATAAAGGGGAAACCAGTGAACAAGTGCGGTCGAAAATTATTAAAGTTCGTGAAATTCAATTTGCCCGCGCTGG
AAAAATCAACGCACATTTAAGTAGTAAAGAAATTGAACGAGATTGCAAAATTAGCTCGCAAGACGGTATTTTTCTTGAAA
ATACGCTCACTCAATTAGGGCTTTCTGTGCGTGCTTATCACCGCATTTTAAAAGTGGCTCGCACCATTGCAGATCTAAAT
AACGAAAAGCAAATCCAACGCCCTCATTTGGCCGAAGCGCTTTCCTATCGGGCGATGGATCGACTGTTGCAGAAACTTTC
AAAGAATTTAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

83.629

99.217

0.83
  comM Glaesserella parasuis strain SC1401

75.148

99.217

0.746
  comM Vibrio cholerae strain A1552

64.173

99.413

0.638
  comM Vibrio campbellii strain DS40M4

63.386

99.413

0.63
  comM Legionella pneumophila str. Paris

50.988

99.022

0.505
  comM Legionella pneumophila strain ERS1305867

50.988

99.022

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.332

100

0.47