Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   L4F93_RS05460 Genome accession   NZ_CP091456
Coordinates   1149864..1150235 (+) Length   123 a.a.
NCBI ID   WP_250351468.1    Uniprot ID   -
Organism   Avibacterium sp. 20-132     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1144864..1155235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4F93_RS05460 (L4F93_05460) comE1/comEA 1149864..1150235 (+) 372 WP_250351468.1 helix-hairpin-helix domain-containing protein Machinery gene
  L4F93_RS05465 (L4F93_05465) rdgB 1150385..1150999 (+) 615 WP_250351469.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  L4F93_RS05470 (L4F93_05470) hemW 1150999..1152147 (+) 1149 WP_250351470.1 radical SAM family heme chaperone HemW -
  L4F93_RS05475 (L4F93_05475) rpiA 1152250..1152909 (+) 660 WP_250351471.1 ribose-5-phosphate isomerase RpiA -
  L4F93_RS05480 (L4F93_05480) serA 1152932..1154164 (+) 1233 WP_250351472.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13204.08 Da        Isoelectric Point: 9.6251

>NTDB_id=651437 L4F93_RS05460 WP_250351468.1 1149864..1150235(+) (comE1/comEA) [Avibacterium sp. 20-132]
MKIKTILSSLLLSTALLGSFSVAAQSQQNDKASPQLESAVEVAKASSSFIGEKLNINTATASDIQRALVGIGAKKAEAIV
EYREKHGKFTAIEQLLEVQGIGKATLEKNRERIDPLSFSENSK

Nucleotide


Download         Length: 372 bp        

>NTDB_id=651437 L4F93_RS05460 WP_250351468.1 1149864..1150235(+) (comE1/comEA) [Avibacterium sp. 20-132]
ATGAAAATTAAGACAATTTTATCTTCTTTACTTCTATCAACCGCATTATTAGGGAGTTTTTCTGTTGCCGCACAATCTCA
ACAAAATGATAAGGCGAGTCCTCAGTTAGAAAGCGCAGTGGAAGTGGCGAAAGCCTCTTCTTCTTTTATTGGCGAAAAAT
TGAATATCAATACTGCAACAGCTAGCGATATTCAACGTGCATTAGTGGGTATTGGCGCTAAAAAAGCGGAAGCGATTGTT
GAGTATAGAGAAAAACACGGCAAATTTACTGCCATAGAACAGCTGTTGGAGGTTCAGGGCATTGGTAAAGCAACATTAGA
AAAAAACAGAGAACGCATTGATCCTTTATCATTTAGTGAAAATAGCAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

56.757

90.244

0.512
  comEA/comE1 Glaesserella parasuis strain SC1401

78.333

48.78

0.382
  comEA Vibrio cholerae C6706

39.823

91.87

0.366
  comEA Vibrio cholerae strain A1552

39.823

91.87

0.366