Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L4F93_RS01225 Genome accession   NZ_CP091456
Coordinates   279768..280997 (-) Length   409 a.a.
NCBI ID   WP_250350748.1    Uniprot ID   -
Organism   Avibacterium sp. 20-132     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274768..285997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4F93_RS01195 (L4F93_01195) raiA 275386..275706 (-) 321 WP_250350742.1 ribosome-associated translation inhibitor RaiA -
  L4F93_RS01200 (L4F93_01200) - 276064..277431 (-) 1368 WP_250350743.1 sodium:alanine symporter family protein -
  L4F93_RS01205 (L4F93_01205) - 277914..278180 (-) 267 WP_250350744.1 GNAT family N-acetyltransferase -
  L4F93_RS01210 (L4F93_01210) yacG 278209..278412 (-) 204 WP_250350745.1 DNA gyrase inhibitor YacG -
  L4F93_RS01215 (L4F93_01215) coaE 278405..279034 (-) 630 WP_250350746.1 dephospho-CoA kinase -
  L4F93_RS01220 (L4F93_01220) - 279082..279771 (-) 690 WP_250350747.1 A24 family peptidase -
  L4F93_RS01225 (L4F93_01225) pilC 279768..280997 (-) 1230 WP_250350748.1 type II secretion system F family protein Machinery gene
  L4F93_RS01230 (L4F93_01230) manX 281378..282361 (+) 984 WP_250350749.1 PTS mannose transporter subunit IIAB -
  L4F93_RS01235 (L4F93_01235) - 282374..283177 (+) 804 WP_250350750.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  L4F93_RS01240 (L4F93_01240) - 283191..284027 (+) 837 WP_250350751.1 PTS mannose transporter subunit IID -
  L4F93_RS01245 (L4F93_01245) - 284122..284664 (+) 543 WP_250350752.1 DUF986 family protein -
  L4F93_RS01250 (L4F93_01250) manA 284667..285875 (+) 1209 WP_250350753.1 mannose-6-phosphate isomerase, class I -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 46782.36 Da        Isoelectric Point: 9.8179

>NTDB_id=651422 L4F93_RS01225 WP_250350748.1 279768..280997(-) (pilC) [Avibacterium sp. 20-132]
MNEGIMKLFNWQAYNFLQQKQQGMIVAENVEMARQALFQRQLQNIKLQRNWQLPRKPKANELYELINQLALLLKSAVPMK
QSLQLLAQNCTVISLNLWLGQLINDLESGLSFSQGIEKQGKYFSQQEQQLIQVGEMTGKLAQVCEQIAQHRQRSLILQRK
IQKILLYPMLVLGISLLLTLLLLIFIVPQFAEMYANNSASLPVFTAFLLHLSEGLQQHFWQLGCLFILTLVFIRFRLKHS
SMLIKWKNQCLSKMPILGKITQLARLIRFSQALALMLRSGVPLNVALQSFLPKRQSWQVEKNDVADQVLNQAVETALYWL
NQGYKLSDSVASDFFPMTAQQMLKIGEESGQVAQMLQHIADKYQQDLNHQVDLLSQLLEPLLMLIIGGLIGAVLLGMYLP
IFNMGSMIQ

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=651422 L4F93_RS01225 WP_250350748.1 279768..280997(-) (pilC) [Avibacterium sp. 20-132]
ATGAACGAAGGAATAATGAAACTGTTTAATTGGCAAGCCTATAATTTTTTACAACAAAAACAACAAGGAATGATCGTGGC
TGAGAATGTTGAAATGGCACGACAAGCTTTGTTTCAACGCCAGTTGCAAAATATCAAATTGCAGCGCAACTGGCAATTGC
CGCGCAAGCCAAAAGCAAATGAGTTATATGAATTGATTAACCAGCTCGCATTATTGCTAAAATCTGCTGTGCCGATGAAG
CAAAGTTTGCAGTTATTAGCACAGAATTGTACGGTCATTTCCTTAAATCTTTGGCTTGGGCAATTGATTAATGATCTTGA
AAGTGGATTAAGTTTTTCACAAGGGATTGAAAAACAAGGAAAATATTTTTCACAGCAAGAACAGCAACTCATTCAAGTTG
GCGAAATGACAGGCAAGCTCGCACAGGTGTGCGAGCAAATCGCCCAACATCGTCAGCGCTCTTTAATTTTGCAACGAAAA
ATCCAAAAAATTTTACTTTACCCAATGCTGGTGCTAGGTATTTCCCTGCTTTTAACGTTGTTACTGCTAATTTTTATCGT
GCCACAATTTGCCGAGATGTACGCGAATAATAGTGCCAGTTTGCCTGTATTTACCGCGTTTTTATTGCATCTTTCAGAAG
GGCTACAACAACACTTTTGGCAGCTAGGTTGTTTGTTTATACTTACTTTGGTCTTTATTCGTTTTCGTTTAAAACACTCG
TCAATGTTGATCAAATGGAAAAATCAATGTCTCAGTAAAATGCCAATTTTAGGCAAGATCACGCAATTAGCGCGCCTGAT
TCGCTTTAGTCAAGCGCTTGCGTTAATGTTGCGTTCCGGTGTGCCGTTAAATGTGGCACTACAATCTTTTTTGCCAAAAC
GGCAAAGTTGGCAAGTAGAAAAAAATGATGTGGCAGATCAGGTGTTAAATCAAGCCGTAGAAACGGCGTTATATTGGCTT
AATCAGGGCTATAAACTTTCTGACAGCGTAGCCAGTGATTTTTTTCCAATGACTGCGCAACAAATGCTAAAAATTGGTGA
AGAAAGCGGACAGGTCGCCCAAATGCTACAACATATTGCTGATAAATATCAGCAAGATCTCAATCACCAAGTGGATCTCC
TCTCTCAATTGCTTGAACCACTTTTGATGCTGATTATTGGTGGCCTGATCGGGGCTGTTTTACTCGGAATGTATTTACCA
ATTTTCAATATGGGATCAATGATTCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(269-400)

Type II secretion system (T2SS), protein F (T2SSF)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

59.553

98.533

0.587
  pilC Haemophilus influenzae 86-028NP

59.057

98.533

0.582
  pilC Glaesserella parasuis strain SC1401

41.397

98.044

0.406