Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   L4F93_RS11985 Genome accession   NZ_CP091456
Coordinates   2476352..2478805 (-) Length   817 a.a.
NCBI ID   WP_250350448.1    Uniprot ID   -
Organism   Avibacterium sp. 20-132     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2471352..2483805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4F93_RS11960 (L4F93_11960) - 2471812..2472420 (-) 609 WP_250350443.1 YidB family protein -
  L4F93_RS11965 (L4F93_11965) kdsB 2472458..2473231 (-) 774 WP_250350444.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L4F93_RS11970 (L4F93_11970) - 2473231..2473425 (-) 195 WP_250350445.1 Trm112 family protein -
  L4F93_RS11975 (L4F93_11975) lpxK 2473492..2474502 (-) 1011 WP_250350446.1 tetraacyldisaccharide 4'-kinase -
  L4F93_RS11980 (L4F93_11980) msbA 2474563..2476311 (-) 1749 WP_250350447.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  L4F93_RS11985 (L4F93_11985) rec2 2476352..2478805 (-) 2454 WP_250350448.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L4F93_RS11990 (L4F93_11990) thiM 2479222..2480028 (+) 807 WP_250351703.1 hydroxyethylthiazole kinase -
  L4F93_RS11995 (L4F93_11995) thiD 2480042..2480863 (+) 822 WP_250350449.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L4F93_RS12000 (L4F93_12000) thiE 2480856..2481518 (+) 663 WP_250350450.1 thiamine phosphate synthase -
  L4F93_RS12005 (L4F93_12005) - 2481519..2482739 (+) 1221 WP_250350451.1 divalent metal cation transporter -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 92933.46 Da        Isoelectric Point: 9.9108

>NTDB_id=651450 L4F93_RS11985 WP_250350448.1 2476352..2478805(-) (rec2) [Avibacterium sp. 20-132]
MKFSLKLDVILWLIIGAGLSLLYVPKALLMNLHLMFWLVGSGALAVLIAYAFTYYNTAKCLIYGVIFVLSLGYFHFQANQ
LLSQAEQLARVNNHISTPIKIEKILHQQDYQTIIATARLAEKLPEQRIYLQWQSKNNSVSDRKIEAVKVGQIWQAELLLK
PLASRLNQGGFERQKWYFSQGISAYGRVKSAVKITENFSWRERLLQVSFQQTQGLSMQGLLLALGFGERAWLNPEHWQIY
QKTNTAHLIAISGLHIGLAMLLGFALARVMQFFLPTHRIGAIWPLLCGILIALIYAQLAGFSIPTLRALLALCLVCVIRM
LRCYYTAWQYFQWVVALLMLWDPMMLLSVSFWLSAGAVASLILWYQLVPFDCIKWQIYPIKNVWVKKLVRWIFSLFHLQL
GLLCLFTPIQLYFFHGMALSGMIANLFAVPLFSFCLVPMVLFAALSQGALGSWQGANWLAEYLTDYLAQWQGYWLNISHK
QGQWIVILLLGLGLLYVHFLQYFQQNSQLKVMKKPILAVKKSISLNAEKLPNPRFLQKMKFIFMGLLSIMLINLGWQGIN
TPKWRLETLDVGQGLATLLVKNQRGILYDTGAAWRNGSMAELEILPYLQRQGIVLDKLVLSHDDNDHSGGAEAILQAFPE
VELMASSRKNASKKHRTFCLQGKQWQWQGLTITALSPQQIRDRAENPDSCVLLIDDGQYKVLLTGDADSQTERQFADLAG
KIEILQVGHHGSKTSSSEYFIKTVQPKIALISSSRGNPWHFPHSVVLERLKAQQSAVYNTADFGQISLLFFPEQIKIHTV
RSEFSPWYRGLIGLLAK

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=651450 L4F93_RS11985 WP_250350448.1 2476352..2478805(-) (rec2) [Avibacterium sp. 20-132]
ATGAAATTTTCGCTCAAATTAGATGTGATTTTATGGCTGATTATTGGGGCAGGCTTGAGTTTACTTTATGTCCCGAAAGC
CCTATTAATGAACTTACATTTAATGTTTTGGCTTGTGGGAAGTGGAGCATTGGCAGTCTTGATTGCCTATGCTTTTACTT
ATTACAACACGGCAAAATGCCTCATTTATGGGGTGATTTTTGTGTTGAGTTTAGGGTATTTTCATTTCCAAGCGAATCAG
CTTTTGAGCCAAGCAGAACAGCTTGCCCGTGTAAATAACCACATCAGCACGCCAATCAAGATCGAGAAAATTTTACATCA
GCAAGATTATCAAACGATTATTGCCACAGCGAGATTAGCAGAAAAGTTGCCCGAACAGCGTATTTATTTGCAATGGCAAA
GCAAGAATAACAGCGTTTCAGATAGGAAGATTGAAGCAGTTAAAGTAGGGCAAATTTGGCAGGCAGAATTATTGCTTAAA
CCTTTAGCAAGCCGTTTAAATCAAGGCGGTTTTGAACGGCAAAAATGGTATTTTTCACAAGGCATTAGCGCCTATGGCAG
AGTAAAAAGTGCGGTAAAAATTACGGAGAATTTTTCTTGGCGCGAGCGATTATTGCAAGTCAGTTTTCAGCAGACCCAAG
GTTTATCTATGCAAGGACTGTTACTGGCATTGGGTTTTGGCGAACGAGCGTGGCTTAACCCTGAACATTGGCAAATTTAT
CAGAAAACAAATACAGCACATCTCATCGCAATTTCTGGTTTGCATATTGGCTTGGCGATGTTGCTCGGTTTTGCTCTCGC
AAGAGTAATGCAGTTCTTTTTACCCACTCACCGAATAGGGGCGATTTGGCCATTATTATGTGGGATTTTGATTGCGTTAA
TTTATGCTCAGCTAGCTGGATTCTCTATTCCCACCTTAAGAGCATTGCTTGCCTTATGCTTGGTTTGCGTGATCCGAATG
CTACGCTGTTATTATACCGCTTGGCAGTATTTTCAATGGGTGGTGGCATTGCTTATGCTATGGGATCCAATGATGTTACT
TTCCGTCAGCTTTTGGCTTTCTGCGGGCGCGGTAGCGAGCTTGATTTTATGGTATCAGCTTGTTCCTTTCGATTGTATTA
AGTGGCAAATTTATCCGATTAAAAATGTGTGGGTGAAGAAACTAGTGCGCTGGATTTTTTCCTTATTTCATCTGCAATTG
GGGTTGCTATGTTTATTTACCCCTATTCAGCTTTATTTTTTTCACGGAATGGCTTTATCGGGAATGATAGCAAATCTTTT
CGCTGTGCCATTGTTCAGTTTCTGTCTTGTCCCAATGGTGCTGTTTGCAGCATTGAGTCAAGGGGCATTGGGTTCGTGGC
AAGGGGCAAATTGGCTTGCAGAATACCTCACCGACTATCTGGCACAATGGCAAGGATATTGGTTGAATATATCTCATAAG
CAAGGGCAATGGATTGTGATTCTATTACTTGGTTTAGGATTACTTTATGTTCACTTTTTGCAGTATTTTCAGCAAAATTC
ACAGCTAAAAGTAATGAAAAAACCGATCTTAGCGGTAAAAAAGAGCATTTCACTTAATGCAGAAAAATTGCCCAATCCGC
GATTTCTGCAAAAAATGAAGTTTATTTTTATGGGCTTGCTTAGCATAATGCTGATCAATTTAGGGTGGCAAGGGATAAAT
ACACCTAAATGGCGGTTAGAAACCCTTGATGTCGGGCAGGGCTTGGCTACCTTATTGGTGAAAAATCAGCGTGGTATTTT
ATATGACACTGGAGCAGCTTGGCGTAATGGCAGTATGGCTGAGTTAGAAATTTTGCCTTATTTGCAACGACAAGGCATTG
TGCTAGACAAATTGGTTTTGAGCCACGATGATAATGATCATTCAGGGGGCGCAGAAGCGATTTTACAGGCATTTCCAGAG
GTTGAATTAATGGCGTCTTCTCGAAAAAATGCGTCAAAAAAACACCGCACTTTTTGTCTTCAAGGAAAACAATGGCAATG
GCAAGGATTAACTATTACTGCGCTTTCACCGCAACAGATCCGAGATCGTGCAGAAAATCCAGACTCTTGCGTACTGTTGA
TTGATGATGGGCAATATAAGGTGCTTTTAACAGGGGATGCGGACAGTCAAACAGAGCGCCAATTTGCTGATTTAGCTGGA
AAAATAGAGATATTGCAAGTGGGACATCACGGCAGTAAAACCTCTAGCAGTGAATATTTTATCAAAACAGTACAACCGAA
AATTGCGTTGATTTCTAGTAGCCGTGGCAATCCGTGGCATTTTCCTCACTCAGTGGTTTTAGAGCGTTTAAAGGCACAAC
AAAGTGCGGTGTATAATACCGCTGATTTTGGTCAGATTAGTCTATTGTTCTTCCCTGAGCAGATAAAAATTCATACCGTA
AGATCGGAATTTTCCCCTTGGTATCGGGGATTAATTGGCTTGTTGGCAAAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(570-752)

Domain of unknown function (DUF4131) (DUF4131)

(35-191)

Competence protein (Competence)

(224-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.546

94.982

0.49