Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   L4F93_RS01980 Genome accession   NZ_CP091456
Coordinates   446053..446775 (-) Length   240 a.a.
NCBI ID   WP_250350883.1    Uniprot ID   -
Organism   Avibacterium sp. 20-132     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441053..451775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4F93_RS01965 (L4F93_01965) recC 441677..445081 (-) 3405 WP_250350880.1 exodeoxyribonuclease V subunit gamma -
  L4F93_RS01970 (L4F93_01970) - 445093..445398 (-) 306 WP_250350881.1 DUF5374 domain-containing protein -
  L4F93_RS01975 (L4F93_01975) - 445379..446056 (-) 678 WP_250350882.1 DUF2572 family protein -
  L4F93_RS01980 (L4F93_01980) comO 446053..446775 (-) 723 WP_250350883.1 type II secretion system protein J Machinery gene
  L4F93_RS01985 (L4F93_01985) comN 446776..447300 (-) 525 WP_250350884.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  L4F93_RS02005 (L4F93_02005) pal 448033..448494 (-) 462 WP_250350885.1 peptidoglycan-associated lipoprotein Pal -
  L4F93_RS02010 (L4F93_02010) tolB 448505..449812 (-) 1308 WP_250350886.1 Tol-Pal system beta propeller repeat protein TolB -
  L4F93_RS02015 (L4F93_02015) tolA 449852..451066 (-) 1215 WP_250350887.1 cell envelope integrity protein TolA -
  L4F93_RS02020 (L4F93_02020) tolR 451083..451505 (-) 423 WP_250351601.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27517.67 Da        Isoelectric Point: 8.8977

>NTDB_id=651427 L4F93_RS01980 WP_250350883.1 446053..446775(-) (comO) [Avibacterium sp. 20-132]
MKGYLKGQSLFGLMSALGISSLLLIGIVKFYQHSQWQIQQMNARLFLQAEIERTLQLISKDLRRTGFRAAVEKRKVDNFA
LFEQDERGTSLVLSQSAGEKPNSCVLFFYDLDNSGCIGSTYTKGLCRENGKNRTKEIERELFGYRLKHKMLETRLTYKNT
VKQKCAKEECQGYLQQLACERGGWVDLFDNHKIAITDFSLQWLKESVLLTAYLKGQLTQQPHIEYESQVVIPLLNQGGTE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=651427 L4F93_RS01980 WP_250350883.1 446053..446775(-) (comO) [Avibacterium sp. 20-132]
ATGAAAGGCTATTTAAAAGGACAAAGTTTATTCGGTTTAATGTCAGCGTTGGGAATATCCAGCTTATTACTGATTGGCAT
AGTGAAATTTTATCAACATAGCCAATGGCAAATTCAGCAAATGAATGCGCGTCTGTTTTTACAAGCAGAGATAGAAAGAA
CGTTGCAGTTAATTAGCAAAGATTTACGCCGAACCGGATTTCGTGCCGCAGTTGAAAAACGTAAAGTGGATAATTTCGCC
TTGTTTGAGCAAGATGAACGAGGCACAAGCTTAGTACTTAGCCAATCTGCAGGGGAAAAACCGAATAGCTGTGTGTTATT
TTTCTATGATTTGGATAATTCAGGCTGTATTGGTTCCACTTATACCAAGGGGCTATGTCGTGAAAATGGCAAAAATCGGA
CAAAAGAAATTGAGCGTGAGTTATTCGGTTATCGTTTAAAACATAAAATGCTGGAAACACGTTTGACTTATAAAAATACC
GTTAAGCAAAAATGTGCAAAAGAAGAGTGCCAAGGCTACCTGCAACAGCTCGCTTGTGAGAGAGGCGGTTGGGTAGATTT
ATTTGATAACCATAAAATAGCAATAACGGATTTTTCTTTACAATGGCTAAAAGAATCCGTATTGCTTACGGCATATTTAA
AAGGGCAATTGACGCAACAACCGCATATTGAATATGAAAGCCAAGTAGTGATTCCCTTGCTTAATCAAGGCGGTACAGAA
TGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

49.789

98.75

0.492