Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L4F93_RS05705 Genome accession   NZ_CP091456
Coordinates   1204334..1204849 (-) Length   171 a.a.
NCBI ID   WP_250351512.1    Uniprot ID   -
Organism   Avibacterium sp. 20-132     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1199334..1209849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4F93_RS05690 (L4F93_05690) - 1200355..1200864 (-) 510 WP_250351509.1 MltR family transcriptional regulator -
  L4F93_RS05695 (L4F93_05695) - 1200909..1202060 (-) 1152 WP_250351510.1 mannitol-1-phosphate 5-dehydrogenase -
  L4F93_RS05700 (L4F93_05700) - 1202129..1204000 (-) 1872 WP_250351511.1 PTS mannitol transporter subunit IICBA -
  L4F93_RS05705 (L4F93_05705) ssb 1204334..1204849 (-) 516 WP_250351512.1 single-stranded DNA-binding protein Machinery gene
  L4F93_RS05710 (L4F93_05710) uvrA 1205022..1207850 (+) 2829 WP_250351513.1 excinuclease ABC subunit UvrA -
  L4F93_RS05715 (L4F93_05715) - 1207998..1209044 (+) 1047 WP_250351514.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19146.13 Da        Isoelectric Point: 5.0100

>NTDB_id=651440 L4F93_RS05705 WP_250351512.1 1204334..1204849(-) (ssb) [Avibacterium sp. 20-132]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANISVATSESWMDKNTGERREITEWHRIVFYRRQAEIAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRAERGQGSYAPQGGGYQQQSGNQYAPQGTQPTYPSSKPAQQPTPAPQPAI
DDMQLDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=651440 L4F93_RS05705 WP_250351512.1 1204334..1204849(-) (ssb) [Avibacterium sp. 20-132]
ATGGCTGGAGTAAACAAAGTTATTATCGTAGGAAACCTTGGAAATGATCCTGAAGTTCGCACAATGCCAAATGGTGAAGC
TGTTGCAAACATTAGCGTAGCCACCAGTGAGAGCTGGATGGACAAGAATACTGGTGAACGTCGTGAAATCACTGAATGGC
ATCGCATTGTCTTTTATCGTCGTCAAGCTGAGATCGCAGGAGAATATTTACGAAAAGGGTCAAAAGTGTATGTGGAAGGA
CGCTTAAGAACCCGTAAATGGCAAGATCAAAATGGGCAAGATCGTTACACCACAGAGATTCAAGGTGATGTGCTACAAAT
GTTAGACAGCCGCGCAGAACGTGGACAAGGTAGCTATGCGCCACAAGGCGGGGGTTACCAACAACAAAGTGGCAACCAAT
ACGCCCCTCAAGGAACACAACCAACATATCCATCATCAAAACCAGCGCAGCAACCAACGCCAGCGCCTCAGCCAGCGATT
GATGATATGCAATTAGATGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

65.761

100

0.708
  ssb Vibrio cholerae strain A1552

56.354

100

0.596
  ssb Neisseria gonorrhoeae MS11

48.864

100

0.503
  ssb Neisseria meningitidis MC58

48.295

100

0.497