Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG485_RS24395 Genome accession   NZ_CP108013
Coordinates   5563538..5564947 (-) Length   469 a.a.
NCBI ID   WP_328670697.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00328     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5558538..5569947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG485_RS24370 (OG485_24390) - 5558821..5559471 (-) 651 WP_328670693.1 hypothetical protein -
  OG485_RS24375 (OG485_24395) - 5559459..5559998 (-) 540 WP_328449706.1 SigE family RNA polymerase sigma factor -
  OG485_RS24380 (OG485_24400) - 5560253..5561170 (-) 918 WP_328670694.1 A/G-specific adenine glycosylase -
  OG485_RS24385 (OG485_24405) - 5561363..5562202 (+) 840 WP_328670695.1 hypothetical protein -
  OG485_RS24390 (OG485_24410) disA 5562345..5563469 (-) 1125 WP_328670696.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG485_RS24395 (OG485_24415) radA/sms 5563538..5564947 (-) 1410 WP_328670697.1 DNA repair protein RadA Machinery gene
  OG485_RS24400 (OG485_24420) - 5565293..5567095 (+) 1803 WP_328670698.1 hypothetical protein -
  OG485_RS24405 (OG485_24425) - 5567200..5568057 (-) 858 WP_328670699.1 hypothetical protein -
  OG485_RS24410 (OG485_24430) - 5568183..5569115 (+) 933 WP_328670700.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49573.71 Da        Isoelectric Point: 8.2557

>NTDB_id=651440 OG485_RS24395 WP_328670697.1 5563538..5564947(-) (radA/sms) [Streptomyces sp. NBC_00328]
MAARTKSAKDRPSYRCTECGWQTAKWLGRCAECQAWGTVEEYGAPGVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVLEVADIGAALSVLPRSRRREAPRDEEQRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=651440 OG485_RS24395 WP_328670697.1 5563538..5564947(-) (radA/sms) [Streptomyces sp. NBC_00328]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAATGGCT
CGGCCGCTGCGCCGAATGCCAGGCATGGGGGACGGTCGAGGAGTACGGCGCGCCCGGTGTCCGCACGACGGCACCGGGCC
GGGTCACCACGTCCGCGGTGCCCATCGGACAGGTCGACGGCCGTCAGGCCACCGCCCGCAGCACGGGCGTGCCCGAGCTG
GACCGTGTCCTCGGCGGCGGTCTCGTGCCCGGAGCCGTCGTCCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
CCTGCTGGACGTGGCGGCCAAGTCGGCGAGTGACGAACACCGCACCTTGTATGTGACGGGCGAGGAGTCGGCCAGCCAGG
TGCGGCTGCGCGCGGACCGCATCAAGGCCATCGACGACCACCTCTATCTCGCCGCGGAGACGGATCTGTCCGCGGTCCTC
GGTCATCTGGACGCGGTGAAGCCGTCGCTGCTCATCCTGGACTCCGTCCAGACCATCGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGGGAGGTGGCGGGCGCGCTCATCCGGGCCTCCAAGGAGCGTGGCATGTCCACCCTGC
TCGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGACCCCGGCTGCTCGAACACCTCGTGGACGTCGTCCTGTCCTTC
GAGGGCGACCGGCACGCGCGCCTGAGACTCGTCCGAGGGGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGTTT
CGAGCTGCACGACGAGGGCATCACCGGGCTCACCGACCCGTCGGGGCTCTTCCTGACGCGCCGTGCCGAGCCCGTCCCGG
GCACCTGTCTGACCGTCACTCTCGAAGGCCGTCGTCCCCTGGTCGCCGAGGTCCAGGCGCTCACCGTGGACTCCCAGATC
CCCTCTCCGCGCCGTACGACATCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCTCTCGGAAAGCGGGACATCTACTCGGCGACGGTCGGCGGTGTGAAGCTCACCGAGCCCGCCGCGGACCTCG
CCGTCGCGCTCGCCCTGGCGTCCGCCGCCAGTGACGTCCCGCTGCCCAAGAACCTCGTGGCGATCGGCGAGGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCCGGCTGGCCGAGGCCCACCGCCTGGGCTTCACCCACGCCCTCGT
ACCGACCGATCCGGGCAAGGTTCCCGCCGGCATGAAGGTCCTGGAAGTGGCCGACATCGGCGCGGCTCTGAGTGTCCTTC
CGCGCTCGCGTCGCAGAGAGGCCCCACGGGACGAGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.257

96.375

0.407
  radA Streptococcus pneumoniae D39

44.366

90.832

0.403
  radA Streptococcus pneumoniae R6

44.366

90.832

0.403
  radA Streptococcus pneumoniae Rx1

44.366

90.832

0.403
  radA Streptococcus mitis SK321

44.366

90.832

0.403
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403
  radA Streptococcus pneumoniae TIGR4

44.366

90.832

0.403