Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG485_RS27820 Genome accession   NZ_CP108013
Coordinates   6320443..6321057 (+) Length   204 a.a.
NCBI ID   WP_326785689.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00328     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6315443..6326057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG485_RS27805 (OG485_27820) - 6317509..6318483 (+) 975 WP_328671241.1 ABC transporter ATP-binding protein -
  OG485_RS27810 (OG485_27825) - 6318480..6319220 (+) 741 WP_328671242.1 ABC transporter permease -
  OG485_RS27815 (OG485_27830) - 6319226..6320446 (+) 1221 WP_328674692.1 sensor histidine kinase -
  OG485_RS27820 (OG485_27835) vraR 6320443..6321057 (+) 615 WP_326785689.1 response regulator transcription factor Regulator
  OG485_RS27825 (OG485_27840) - 6321079..6321930 (-) 852 WP_328671243.1 transglutaminase-like domain-containing protein -
  OG485_RS27830 (OG485_27845) - 6321948..6323072 (-) 1125 WP_328671244.1 GNAT family N-acetyltransferase -
  OG485_RS27835 (OG485_27850) fdxA 6323214..6323534 (+) 321 WP_030573070.1 ferredoxin -
  OG485_RS27840 (OG485_27855) - 6323705..6324799 (+) 1095 WP_328671245.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OG485_RS27845 (OG485_27860) - 6324928..6325359 (-) 432 WP_328671246.1 ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21560.87 Da        Isoelectric Point: 5.3792

>NTDB_id=651448 OG485_RS27820 WP_326785689.1 6320443..6321057(+) (vraR) [Streptomyces sp. NBC_00328]
MSRTIKVLLAEDQSMVREALAALLGLEPDIEVVAQVARGDEVLAAARAHDVDVALLDIEMPGMTGIEAAAEVHKELPGVK
LIVLTTFGRPGYLRSAMESGADAFLVKDAPAAQLAAAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGST
NAELAKALHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=651448 OG485_RS27820 WP_326785689.1 6320443..6321057(+) (vraR) [Streptomyces sp. NBC_00328]
ATGAGCCGCACGATCAAGGTCCTGCTCGCCGAGGACCAGTCGATGGTCCGCGAAGCGCTGGCCGCCCTGCTGGGACTGGA
GCCGGACATCGAGGTGGTCGCCCAGGTGGCCCGCGGCGACGAGGTCCTGGCGGCGGCCCGCGCCCACGACGTGGACGTGG
CGCTCCTCGACATCGAGATGCCCGGCATGACCGGCATAGAGGCGGCGGCCGAGGTCCACAAGGAGCTCCCGGGCGTCAAG
CTGATCGTCCTCACCACCTTCGGCCGCCCCGGATACCTGCGCAGCGCCATGGAGTCCGGCGCCGACGCCTTCCTGGTCAA
GGACGCCCCGGCCGCCCAACTCGCCGCGGCCGTACGCAAGGTGCTGGCCGGCGAGCGCGTCATCGACCCCACCCTGGCGG
CGGCCGCGCTGGCCGAGGGCGCCAACCCCCTGACCGACCGCGAGCGCGAGGTCCTCCGCGCCGCCGCCGACGGCTCCACC
AACGCCGAACTGGCCAAGGCCCTCCACCTCTCCCAGGGCACGGTCCGCAACTACCTCTCGACCGCGATCCAGAAACTCGC
GGTACGCAACCGGGCGGAGGCGGTACGGATCGCACGGGAGAAGGGCTGGCTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(143-198)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

35.749

100

0.363