Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01070  |
| T6SS type | Type i4b |
| Strain | Acinetobacter baumannii ATCC 17978 |
| Replicon (RefSeq) | chromosome (NZ_CP018664) |
| Location | 2928457..2956146 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| AUO97_RS13925 | 2924915..2925937 | + | 1023 | WP_000591168.1 | ABC transporter substrate-binding protein | ||
| AUO97_RS13930 | 2925989..2926870 | - | 882 | WP_001000081.1 | ABC transporter ATP-binding protein | ||
| AUO97_RS13935 | 2926870..2927814 | - | 945 | WP_005135439.1 | ABC transporter permease | ||
| AUO97_RS13940 | 2927910..2928311 | - | 402 | WP_000043355.1 | hypothetical protein | ||
| T6CP013803 | TssI | AUO97_RS13945 | 2928457..2931240 | + | 2784 | WP_049594843.1 | type VI secretion system tip protein VgrG |
| AUO97_RS13950 | 2931248..2934253 | + | 3006 | WP_001070510.1 | hypothetical protein | ||
| AUO97_RS13955 | 2934283..2935251 | - | 969 | WP_032046197.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | ||
| AUO97_RS13960 | 2936023..2936715 | + | 693 | WP_000869709.1 | hypothetical protein | ||
| T6CP013804 | TssB | AUO97_RS13965 (tssB) | 2936732..2937235 | + | 504 | WP_001119042.1 | type VI secretion system contractile sheath small subunit |
| T6CP013805 | TssC | AUO97_RS13970 (tssC) | 2937228..2938709 | + | 1482 | WP_001066525.1 | type VI secretion system contractile sheath large subunit |
| T6CP013806 | TssD | AUO97_RS13975 | 2938759..2939262 | + | 504 | WP_000653195.1 | type VI secretion system tube protein Hcp |
| T6CP013807 | TssE | AUO97_RS13980 (tssE) | 2939342..2939818 | + | 477 | WP_001047031.1 | type VI secretion system baseplate subunit TssE |
| T6CP013808 | TssF | AUO97_RS13985 (tssF) | 2939835..2941646 | + | 1812 | WP_049594842.1 | type VI secretion system baseplate subunit TssF |
| T6CP013809 | TssG | AUO97_RS13990 (tssG) | 2941610..2942608 | + | 999 | WP_000555491.1 | type VI secretion system baseplate subunit TssG |
| AUO97_RS13995 | 2942605..2944017 | + | 1413 | WP_000591878.1 | hypothetical protein | ||
| T6CP013810 | TssM | AUO97_RS14000 (tssM) | 2944048..2947872 | + | 3825 | WP_049594841.1 | type VI secretion system membrane subunit TssM |
| AUO97_RS14005 (tagF) | 2947910..2948869 | + | 960 | WP_000557241.1 | type VI secretion system-associated protein TagF | ||
| AUO97_RS14010 | 2948872..2949639 | + | 768 | WP_001072403.1 | OmpA family protein | ||
| AUO97_RS14015 | 2949656..2949919 | + | 264 | WP_000168111.1 | PAAR domain-containing protein | ||
| T6CP013811 | TssH | AUO97_RS14020 (tssH) | 2950139..2952820 | + | 2682 | WP_109426774.1 | type VI secretion system ATPase TssH |
| T6CP013812 | TssA | AUO97_RS14025 (tssA) | 2952844..2953941 | + | 1098 | WP_000020712.1 | type VI secretion system protein TssA |
| T6CP013813 | TssK | AUO97_RS14030 (tssK) | 2953958..2955322 | + | 1365 | WP_000471450.1 | type VI secretion system baseplate subunit TssK |
| T6CP013814 | TssL | AUO97_RS14035 (icmH) | 2955340..2956146 | + | 807 | WP_000083629.1 | type IVB secretion system protein IcmH/DotU |
| AUO97_RS14040 | 2956159..2956761 | + | 603 | WP_000046446.1 | hypothetical protein | ||
| AUO97_RS14045 | 2956769..2957722 | + | 954 | WP_000972583.1 | M15 family metallopeptidase | ||
| AUO97_RS14050 | 2957725..2958576 | - | 852 | WP_000460184.1 | LysR family transcriptional regulator | ||
| AUO97_RS14055 | 2958728..2959396 | + | 669 | WP_001232205.1 | ankyrin repeat domain-containing protein | ||
| AUO97_RS14060 | 2959412..2959894 | + | 483 | WP_000646735.1 | nucleoside deaminase | ||
| AUO97_RS14065 | 2959894..2961072 | + | 1179 | WP_000813819.1 | cyanate transporter |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| ACP00040 |
AUO97_13960 (asaA) | chaperone | Acinetobacter baumannii strain ATCC 17978 | chromosome (NZ_CP018664) | 2936023..2936715 (+) | 446792453 | AUO97_14000 (TssM) | - |