Detailed information of component protein


Summary

Component ID T6CP013805
Component protein type TssC
T6SS ID (Type) T6SS01070 insolico (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) AUO97_RS13970
Coordinate (Strand) 2937228..2938709 (+)
NCBI ID WP_001066525.1
RefSeq NZ_CP018664
Uniprot ID UPI0001785DE0
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.1e-136 66..368
VipB_2 PF18945.2 6e-45 378..488

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 494 a.a.    

>T6CP013805 NZ_CP018664:2937228-2938709 [Acinetobacter baumannii] [TssC]
MNNTQSAAMPLVENEEVNLLDSIVEQSRIARNEEEHSRAKSLIGELAKEVMAGTITVSENMTLSIDKRIAEIDALISKQL
SQIMHNEQFQKIESTWRGLYYFCQETPSNPLIKIRMLNTTKKELVKDFQGATDFDQSTLFKKIYEEEYGSFGGAPYSALI
GDFEFDRTPSDMYLLEQISHVSAAAHAPFISAASPSILGLESFTDIDRPRDVSKIFETAEYVQWRSFRDSEDSRYVALTL
PHVLGRLPYHPKEGTATEGFNFIEDVSGENHNEYLWMNAAYAFGTRLTNAFDMHGWCAAIRGVEGGGLVEGLPVHTFKTQ
DGEVVFKCPTEIAITDRREKELSDLGFIPLVHCKNTDYAAFFGAQSTQKPKKYDNDTANANSALSSQIQYIMAVSRIAHY
LKAMMRDKVGSFASAGNVEAFLNEWLSQYVLLDDGASQEAKAQYPLREASVKVVEDPAQPGHYKSVVFLRPHFQLDELSV
SLRLVTELPQSSN*

  Nucleotide sequence: 1482 bp    

>T6CP013805 NZ_CP018664:2937228-2938709 [Acinetobacter baumannii] [TssC]
ATGAATAATACTCAATCAGCAGCAATGCCACTTGTTGAAAATGAAGAAGTTAATCTTTTAGATTCGATTGTTGAACAAAG
CCGTATTGCACGAAATGAAGAAGAACATTCTCGTGCTAAAAGCTTAATTGGTGAGCTCGCTAAAGAAGTAATGGCAGGAA
CCATTACTGTTTCTGAAAATATGACTTTATCAATTGATAAGCGTATTGCAGAAATTGATGCTCTGATTTCAAAGCAGTTA
AGTCAGATCATGCACAATGAACAATTCCAAAAAATTGAGTCAACTTGGCGTGGTCTTTATTACTTTTGTCAGGAAACGCC
TTCAAATCCGCTCATTAAAATTCGTATGCTTAATACGACTAAGAAAGAGTTGGTAAAAGATTTCCAAGGTGCTACAGACT
TTGATCAAAGCACTTTGTTTAAGAAAATCTACGAAGAAGAATACGGTTCTTTTGGTGGTGCACCATACTCAGCATTAATT
GGTGATTTTGAGTTTGATCGTACTCCATCTGATATGTATTTGCTTGAGCAAATCTCTCATGTTTCAGCGGCAGCACATGC
ACCATTTATTTCAGCTGCTAGTCCGAGCATTTTAGGCCTTGAATCATTTACAGATATTGATCGTCCTAGAGATGTTTCAA
AAATCTTTGAAACCGCTGAATATGTTCAATGGCGTTCGTTCCGTGATAGTGAAGACTCACGTTATGTTGCATTGACTTTA
CCTCATGTCTTGGGTCGTCTCCCATATCATCCAAAAGAAGGTACTGCGACAGAAGGCTTTAATTTTATTGAAGATGTTTC
TGGTGAAAACCACAATGAATATTTGTGGATGAATGCAGCTTATGCTTTTGGTACTCGCTTAACAAATGCATTTGATATGC
ATGGTTGGTGTGCTGCTATTCGCGGTGTTGAAGGTGGTGGTTTAGTTGAAGGCTTGCCAGTACATACTTTTAAAACACAA
GATGGCGAAGTGGTATTCAAGTGTCCAACTGAAATTGCAATCACGGATCGCCGTGAAAAAGAGTTAAGCGATCTAGGTTT
CATTCCGTTAGTACATTGTAAAAATACAGATTACGCAGCTTTCTTTGGCGCGCAATCAACTCAAAAACCTAAAAAATATG
ACAATGATACAGCCAATGCAAACTCGGCTTTATCAAGTCAGATTCAGTACATCATGGCTGTTTCACGTATTGCTCATTAC
TTAAAAGCAATGATGCGAGATAAAGTGGGTAGCTTTGCTTCTGCTGGAAATGTTGAAGCATTCTTAAATGAGTGGTTGTC
ACAGTATGTCTTACTTGACGATGGTGCTTCTCAAGAAGCGAAAGCTCAATACCCGTTACGTGAAGCGTCTGTAAAAGTTG
TAGAAGATCCTGCTCAACCAGGTCACTACAAATCTGTGGTTTTCTTGCGACCACATTTCCAGCTGGATGAGTTGTCGGTT
TCTTTACGACTTGTCACTGAGTTACCTCAGTCCTCAAATTAA