Detailed information of component protein
Summary
| Component ID | T6CP013814 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS01070  (Type i4b) |
| Strain | Acinetobacter baumannii ATCC 17978 |
| Replicon | chromosome |
| Sequence | Protein sequence (269 a.a.); Nucleotide sequence (807 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AUO97_RS14035 |
| Coordinate (Strand) | 2955340..2956146 (+) |
| NCBI ID | WP_000083629.1 |
| RefSeq | NZ_CP018664 |
| Uniprot ID | A0A0J0ZX80_ACIBA, A0A427R4A1_9GAMM, A0A3R9FU43_9GAMM, V5VEM3_ACIBA, A0A7U4DFV7_ACIB5, B0VB14_ACIBY, A0A5K6CSS4_ACIB3, D0C8N1_ACIB2 |
| KEGG ID | abk:LX00_06475, abau:IX87_03905, aby:ABAYE2401 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 1.8e-51 | 35..237 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 269 a.a.
>T6CP013814 NZ_CP018664:2955340-2956146 [Acinetobacter baumannii] [TssL]
MSQSTGAPSLFDDGQIGTGGNNNSQSQVKLQAINLIDLLHDGFYLIFLIRNQYVPADPQRFREKILDLLNRFEQQAKKLQ
FSADDIHDAKYAFCALIDETIVTQQDPSYFNLQNSWLISPLQLSLFGSQLAGYQFFEILEQLRSRGKERLAALEVFHYCL
LLGFQGKYRIESIESLNHLVARVGDEIDYLKGKKVAFSPFSAIPDQIRNIIHRELPFFWILIFLLIFALLTFAGLRFMLN
NQNDKALSNYQNVISAPQEQAHITIYLP*
MSQSTGAPSLFDDGQIGTGGNNNSQSQVKLQAINLIDLLHDGFYLIFLIRNQYVPADPQRFREKILDLLNRFEQQAKKLQ
FSADDIHDAKYAFCALIDETIVTQQDPSYFNLQNSWLISPLQLSLFGSQLAGYQFFEILEQLRSRGKERLAALEVFHYCL
LLGFQGKYRIESIESLNHLVARVGDEIDYLKGKKVAFSPFSAIPDQIRNIIHRELPFFWILIFLLIFALLTFAGLRFMLN
NQNDKALSNYQNVISAPQEQAHITIYLP*
Nucleotide sequence: 807 bp
>T6CP013814 NZ_CP018664:2955340-2956146 [Acinetobacter baumannii] [TssL]
ATGTCACAATCTACAGGTGCTCCTTCTTTATTTGACGATGGGCAAATTGGGACAGGGGGGAATAATAATAGCCAGTCCCA
AGTAAAGTTACAGGCAATTAATCTGATTGATTTATTGCATGATGGTTTTTACTTAATCTTTTTAATTCGAAATCAGTATG
TGCCAGCTGATCCACAGCGCTTTCGTGAAAAAATTCTAGATTTGCTTAATCGATTTGAGCAACAAGCGAAAAAGTTACAA
TTTTCAGCTGATGATATTCATGATGCTAAATATGCGTTTTGTGCGCTAATTGATGAAACGATCGTAACCCAGCAAGACCC
AAGCTATTTTAATTTACAAAATTCTTGGTTAATTAGCCCATTACAGTTAAGTCTGTTTGGTTCTCAGTTAGCGGGTTATC
AATTCTTCGAAATTTTAGAGCAACTACGTAGTCGTGGAAAAGAGCGATTAGCTGCTCTTGAAGTCTTCCATTACTGCTTA
TTATTAGGTTTTCAGGGTAAATACCGAATTGAGTCAATTGAAAGCCTTAACCATTTGGTGGCACGAGTAGGCGATGAAAT
TGATTATCTGAAAGGGAAAAAAGTGGCTTTTTCGCCATTCTCGGCAATTCCTGATCAGATACGAAATATTATCCATCGTG
AGCTACCTTTTTTCTGGATTTTGATTTTCTTATTGATTTTTGCATTACTTACCTTTGCAGGTTTAAGATTTATGCTTAAC
AATCAAAATGATAAAGCATTATCTAATTATCAAAATGTGATTTCTGCCCCACAAGAGCAGGCACATATTACTATTTACTT
ACCTTGA
ATGTCACAATCTACAGGTGCTCCTTCTTTATTTGACGATGGGCAAATTGGGACAGGGGGGAATAATAATAGCCAGTCCCA
AGTAAAGTTACAGGCAATTAATCTGATTGATTTATTGCATGATGGTTTTTACTTAATCTTTTTAATTCGAAATCAGTATG
TGCCAGCTGATCCACAGCGCTTTCGTGAAAAAATTCTAGATTTGCTTAATCGATTTGAGCAACAAGCGAAAAAGTTACAA
TTTTCAGCTGATGATATTCATGATGCTAAATATGCGTTTTGTGCGCTAATTGATGAAACGATCGTAACCCAGCAAGACCC
AAGCTATTTTAATTTACAAAATTCTTGGTTAATTAGCCCATTACAGTTAAGTCTGTTTGGTTCTCAGTTAGCGGGTTATC
AATTCTTCGAAATTTTAGAGCAACTACGTAGTCGTGGAAAAGAGCGATTAGCTGCTCTTGAAGTCTTCCATTACTGCTTA
TTATTAGGTTTTCAGGGTAAATACCGAATTGAGTCAATTGAAAGCCTTAACCATTTGGTGGCACGAGTAGGCGATGAAAT
TGATTATCTGAAAGGGAAAAAAGTGGCTTTTTCGCCATTCTCGGCAATTCCTGATCAGATACGAAATATTATCCATCGTG
AGCTACCTTTTTTCTGGATTTTGATTTTCTTATTGATTTTTGCATTACTTACCTTTGCAGGTTTAAGATTTATGCTTAAC
AATCAAAATGATAAAGCATTATCTAATTATCAAAATGTGATTTCTGCCCCACAAGAGCAGGCACATATTACTATTTACTT
ACCTTGA