Detailed information of component protein


Summary

Component ID T6CP013806
Component protein type TssD
T6SS ID (Type) T6SS01070 insolico (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) AUO97_RS13975
Coordinate (Strand) 2938759..2939262 (+)
NCBI ID WP_000653195.1
RefSeq NZ_CP018664
Uniprot ID A0A009RJK0_9GAMM, A0A010KAB5_9GAMM, A0A013TMC1_9GAMM, A0A013UTK5_9GAMM, A0A022IZT8_9GAMM, A0A0E1PSF3_ACIBA, A0A0J0ZX19_ACIBA, A0A0R1C1Y7_ACINO, A0A143IYH8_ACIPI, A0A1A0GM72_ACICA, A0A1V2V3D7_9GAMM, A0A1Y5NR20_ACINO, A0A372I5T8_9GAMM, A0A385EU73_ACIBA, A0A3R9CCF9_9GAMM, A0A3R9GB64_9GAMM, A0A4R6CNR4_9GAMM, A0A654KYA4_ACIBM, A0A656HXZ4_ACIBA, A0A656L8Y9_ACIBA, B0VB03_ACIBY, D0C8P3_ACIB2, F0KJP8_ACICP, L9MI81_9GAMM, N8S3X6_9GAMM, N9I0I3_ACIBA, R9RIP4_ACIBA
KEGG ID abz:ABZJ_01456, abau:IX87_03965, abk:LX00_06415, abw:BL01_13265, acc:BDGL_000641, aby:ABAYE2413
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 5.4e-40 5..139

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 168 a.a.    

>T6CP013806 NZ_CP018664:2938759-2939262 [Acinetobacter baumannii] [TssD]
MKDIYVEFRGKYKVDGESRDSEHKGWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMVFVKDLDATSPKLWEACSAG
YTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEAFGLKYAAVEWTYNQQDINGTAKGAVTKKWSLSN
NTASYAA*

  Nucleotide sequence: 504 bp    

>T6CP013806 NZ_CP018664:2938759-2939262 [Acinetobacter baumannii] [TssD]
ATGAAAGATATATACGTTGAGTTTCGCGGTAAATATAAAGTTGATGGAGAATCTCGTGATTCTGAGCACAAAGGTTGGTT
AGAAGTTAACTCTTGGTCTCATAACATCCGTCAACCTAAATCTGCTACTTCAAGTAGTGTAGGCGGCCACACTGCTGAAC
GTGTTGAACATTCTGACATGGTTTTCGTAAAAGACTTAGATGCAACTAGCCCTAAATTATGGGAAGCTTGTTCAGCTGGT
TATACATTTGATGAAGTACAAATCGACTTCTATCGTGCAAATGGCGATAAACGTATCAAGTACTTACAAATCAAATTGAA
GCACGTTTTAGTTTCTAGTGTGACTCCAACTGTTAACGAAGAAGGCGTTCCTACAGAAGCATTCGGTTTGAAATATGCTG
CTGTTGAGTGGACTTATAACCAACAAGATATTAACGGTACTGCTAAAGGTGCTGTTACTAAGAAATGGTCACTTTCTAAT
AATACAGCTTCTTACGCAGCGTAA