Detailed information of component protein


Summary

Component ID T6CP013807
Component protein type TssE
T6SS ID (Type) T6SS01070 insolico (Type i4b)
Strain Acinetobacter baumannii ATCC 17978
Replicon chromosome
Sequence Protein sequence (159 a.a.); Nucleotide sequence (477 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) AUO97_RS13980
Coordinate (Strand) 2939342..2939818 (+)
NCBI ID WP_001047031.1
RefSeq NZ_CP018664
Uniprot ID A0A0E1PYI2_ACIBA, A0A0J0ZYC3_ACIBA, A0A372I6M5_9GAMM, A0A385EU41_ACIBA, A0A3R9DYQ0_9GAMM, A0A427XA82_9GAMM, A0A654KYE0_ACIBM, A0A656I173_ACIBA, A0A656LAZ1_ACIBA, B0VB02_ACIBY, D0C8P2_ACIB2, N9HTY5_ACIBA, N9KTR7_ACIBA, V5VES8_ACIBA
KEGG ID abau:IX87_03960, abz:ABZJ_01457, abw:BL01_13260, aby:ABAYE2412, abk:LX00_06420
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 4.7e-17 34..133

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 159 a.a.    

>T6CP013807 NZ_CP018664:2939342-2939818 [Acinetobacter baumannii] [TssE]
MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVIDDYPLVKKSILQFGIIDFVGLS
TANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART*

  Nucleotide sequence: 477 bp    

>T6CP013807 NZ_CP018664:2939342-2939818 [Acinetobacter baumannii] [TssE]
ATGAACTTAGATCGGCTTTATCCATACGGATTTCGTTCAACTTTATTTGATCGCTTAATTCCAGAAAGTGAAGATTATGC
AAAAGGTCTTTCTATTCAGCAATTAAGAGAATCTGTAGCAAAGGATTTAGAAGATTTGCTCAATAGTCGGGTAGCAAAGT
TAGATCATGTGATTGATGACTATCCACTTGTAAAAAAATCGATACTTCAGTTCGGGATTATTGATTTTGTGGGGCTTTCT
ACAGCCAACCCTCTGGATCGGGATAAAATTTGCCAATCCATTGAGCAATCAATAGCAGCTCATGAACCTCGGCTAAGACA
AATACGGGTAGAGATGTTATTAGATGGACATAATATGGGCGCATTATGTTTAAGTATTCAGGCTTATCTAAATATTCACC
CCTTATATGAACCTGTTGTATTTGATGCATTGTTAAAACCAACAACGCAGCAATATGTAATTTCAGCAAGAACTTAA